HHsearch alignment for GI: 254781026 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=97.53 E-value=5.3e-05 Score=50.11 Aligned_cols=118 Identities=24% Similarity=0.238 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210-011023434568279982
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGEDSL 79 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~i~l 79 (186)
T Consensus 103 l~G~~GtGKThLA~Alg~~--------A~~~--G~~v--------~f-----~~~~~L~~~L~~a~~~g~~~~~~~--~l 157 (254)
T PRK06526 103 FLGPPGTGKTHLAIGLGIR--------ACQA--GHRV--------LF-----ATAAQWVARLAAAHHAGRLQDELV--KL 157 (254)
T ss_pred EECCCCCCHHHHHHHHHHH--------HHHC--CCCE--------EE-----EEHHHHHHHHHHHHHCCCHHHHHH--HH
T ss_conf 9899998689999999999--------9986--9967--------99-----877999999999885580999999--85
Q ss_pred CCCCEEEEECHHH--CCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7998899803878--59889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r 80 AHNGVLFLDEIPE--FSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ 157 (186)
Q Consensus 80 Ah~GVLflDE~~e--~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~ 157 (186)
T Consensus 158 ~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye---~~----------S~IiTSn~~~~~W~~~f~D------------- 211 (254)
T PRK06526 158 GRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYE---RA----------SLIVTSNKPFGRWGEVFGD------------- 211 (254)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC---CC----------CEEEECCCCHHHHHHHCCC-------------
T ss_conf 136877650213644788999999999999974---58----------8676658986688886486-------------
Q ss_pred HHCCHHHHHCCC
Q ss_conf 512243210042
Q gi|254781026|r 158 ARISGPLMDRID 169 (186)
Q Consensus 158 ~rls~plldR~D 169 (186)
T Consensus 212 ~~la~AilDRL~ 223 (254)
T PRK06526 212 DVVAAAMIDRLV 223 (254)
T ss_pred HHHHHHHHHHHC
T ss_conf 899999999862