HHsearch alignment for GI: 254781026 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=97.39 E-value=0.00023 Score=46.43 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=59.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH-----HHHHHHHCEEECCCCCCCCCCCCCCCEEEC-CCC-CCCHHHCCCCCCCCC
Q ss_conf 9777860599999998874889897-----885323000000278887565311120203-775-210011023434568
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL-----EESLEVSMIYSISGHSSHEYSFIQNRPFRS-PHH-SVTIAALIGGGLQVL 73 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~-----~e~le~~~i~s~~g~~~~~~~~~~~~p~~~-~~~-~~~~~~l~gg~~~~~ 73 (186)
T Consensus 43 f~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~-~i~~g~--~~d-~~---eidaas~~~v~~~r~l~~~-~~~~ 114 (696)
T PRK06872 43 FSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCK-AIEEGN--FID-LI---EIDAASRTKVEDTRELLDN-VQYK 114 (696)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHCCC--CCC-EE---EEECCCCCCHHHHHHHHHH-CCCC
T ss_conf 11789888889999999986789999999788862257-674478--775-46---7505655788999999984-5457
Q ss_pred HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 2799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 115 p---~~~~~kvy~idevhmls~~~fnallktleepp~~v-----------~f-~latt~~~ 160 (696)
T PRK06872 115 P---VVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYV-----------KF-LLATTDPQ 160 (696)
T ss_pred C---CCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCE-----------EE-EEECCCHH
T ss_conf 7---67754799970054438999999987502797544-----------89-98438632