HHsearch alignment for GI: 254781026 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=96.91 E-value=0.00098 Score=42.69 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHC--EEECCCCCCCCCCCCCCCEEECCCCCCCHHHC--CCCCCCCCH
Q ss_conf 97778605999999988748898--9788532300--00002788875653111202037752100110--234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL--SLEESLEVSM--IYSISGHSSHEYSFIQNRPFRSPHHSVTIAAL--IGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l--~~~e~le~~~--i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l--~gg~~~~~p 74 (186)
T Consensus 33 f~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HP-D--~~~i~p~---~~~i~idqiR~L~~~~~~~p 106 (329)
T PRK08058 33 FEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHP-D--VHLVAPD---GQSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC-C--EEEECCC---CCCCCHHHHHHHHHHHCCCC
T ss_conf 5789998899999999999739999999988788899998769999-7--6774566---14077999999999964387
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC
Q ss_conf 79982799889980387859889999999997195
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGE 109 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~ 109 (186)
T Consensus 107 ---~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp 138 (329)
T PRK08058 107 ---VESNKKVYIIEHADKMTASAANSLLKFLEEPS 138 (329)
T ss_pred ---CCCCCEEEEEECHHHHCHHHHHHHHHHHHCCC
T ss_conf ---57886799973477629999999999864689