HHsearch alignment for GI: 254781026 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=96.96 E-value=0.00078 Score=43.27 Aligned_cols=101 Identities=22% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCH----------HHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC-CCHHHCCCCC
Q ss_conf 9777860599999998874889897----------8853230000002788875653111202037752-1001102343
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSL----------EESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS-VTIAALIGGG 69 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~----------~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~-~~~~~l~gg~ 69 (186)
T Consensus 50 ~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~--~i~~~~~~d~~e~----daas~~~v~~~r~~~~~- 122 (600)
T PRK09111 50 LTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQ--AIMEGRHVDVIEM----DAASHTGVDDIREIIES- 122 (600)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH--HHHCCCCCCEEEE----ECCCCCCHHHHHHHHHH-
T ss_conf 4578987899999999999669887666899889899886589--8866899875885----15545788899999986-
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf 456827998279988998038785988999999999719523
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECI 111 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~ 111 (186)
T Consensus 123 ~~~~p---~~~~~kv~iidevhmls~~afnallktleepp~~ 161 (600)
T PRK09111 123 VRYRP---VSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH 161 (600)
T ss_pred HCCCC---CCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 05388---7775469996001105799999999876259865