HHsearch alignment for GI: 254781026 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=97.45  E-value=6.6e-05  Score=49.55  Aligned_cols=126  Identities=19%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCCCCCCCCCHHHHH-
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210-01102343456827998-
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALIGGGLQVLPGEDS-   78 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~gg~~~~~pG~i~-   78 (186)
T Consensus       106 l~G~~GtGKThLA~Alg~~--------A~~~-------G~---~v~f~-----~~~~L~~~L~~a~~~~---~~~~~l~r  159 (258)
T PRK09183        106 LLGPSGVGKTHLAIALGYE--------AVRA-------GI---KVRFT-----TAADLLLQLSTAQRQG---RYKTTLQR  159 (258)
T ss_pred             EECCCCCCHHHHHHHHHHH--------HHHC-------CC---EEEEE-----EHHHHHHHHHHHHHCC---CHHHHHHH
T ss_conf             9899998689999999999--------9987-------99---39997-----8999999999998768---59999998


Q ss_pred             -HCCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             -2799889980387--8598899999999971952301003078984701567522746588788988764389999999
Q gi|254781026|r   79 -LAHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE  155 (186)
Q Consensus        79 -lAh~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~  155 (186)
T Consensus       160 ~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye---~----------~S~IiTSn~~~~~W~~~f~~D----------  216 (258)
T PRK09183        160 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE---K----------GAMILTSNLPFGQWDQTFAGD----------  216 (258)
T ss_pred             HHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHC---C----------CCEEEECCCCHHHHHHHCCCC----------
T ss_conf             74346514431331546888899999999999857---6----------778998899978985651686----------


Q ss_pred             HHHHCCHHHHHCCC---EEEECCCC
Q ss_conf             98512243210042---59983885
Q gi|254781026|r  156 YQARISGPLMDRID---IRIAVPSR  177 (186)
Q Consensus       156 Y~~rls~plldR~D---l~v~~~~~  177 (186)
T Consensus       217 --~~la~AilDRL~H~a~~i~l~Ge  239 (258)
T PRK09183        217 --AALTSAMLDRLLHHSHVVQIKGE  239 (258)
T ss_pred             --HHHHHHHHHHHCCCEEEEEECCC
T ss_conf             --99999999986046179974587