HHsearch alignment for GI: 254781026 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=100.00 E-value=0 Score=474.60 Aligned_cols=178 Identities=47% Similarity=0.766 Sum_probs=167.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 215 l~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~-~~~rPfR~PHHs~S~~aliGGG~~~~PGEISLA 293 (506)
T PRK09862 215 LIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQ-WRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA 293 (506)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCEECCCCCCCHHHHHCCCCCCCCCCEEEC
T ss_conf 8769994598999775123899898999999999987189877775-466850378876547666379999999722213
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
T Consensus 294 H~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~~~PA~F~LVaAmNPCPCG~~~~~--~~~Ct~~~~~rY~~rl 371 (506)
T PRK09862 294 HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN--HNRCTPEQTLRYLNRL 371 (506)
T ss_pred CCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEEEECCHHHHEHHCCCCCCCCCCCC--CCCCCHHHHHHHHHHC
T ss_conf 57578845500068889998776224775999966867986153311110378888889999--7778989999998656
Q ss_pred CHHHHHCCCEEEECCCCCHHH
Q ss_conf 243210042599838856688
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 372 SGPllDRiDl~v~v~~~~~~~ 392 (506)
T PRK09862 372 SGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred CHHHHHCEEEEEECCCCCHHH
T ss_conf 622130364799816899666