HHsearch alignment for GI: 254781026 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.95 E-value=2.1e-09 Score=76.00 Aligned_cols=128 Identities=23% Similarity=0.375 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCE--EECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf 9777860599999998874889897885323000--00027888756531112020377521001102343456827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMI--YSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i--~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~ 78 (186)
T Consensus 354 lvGpPGvGKTSl~~sIA~al~r----------~f~rislGGv~Dea-eirGHrr--------TY-------vgampGrii 407 (784)
T PRK10787 354 LVGPPGVGKTSLGQSIAKATGR----------KYVRMALGGVRDEA-EIRGHRR--------TY-------IGSMPGKLI 407 (784)
T ss_pred EECCCCCCHHHHHHHHHHHHCC----------CEEEEECCCCCCHH-HHCCCCC--------CC-------CCCCCHHHH
T ss_conf 6469987724699999998589----------86998068878888-8256433--------43-------443683899
Q ss_pred H------CCCCEEEEECHHHCCH----HHHHHHHHHHHCCCEE---EHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 2------7998899803878598----8999999999719523---0100307898470156752274658878898876
Q gi|254781026|r 79 L------AHNGVLFLDEIPEFSP----QTLNALRQPLETGECI---IARANRKISYPSRIQLIAAMNPCRCGMSNKDENV 145 (186)
Q Consensus 79 l------Ah~GVLflDE~~e~~~----~~l~~L~~~le~g~v~---i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~ 145 (186)
T Consensus 408 ~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~Dl-S~v~Fi~TaN~~----------- 475 (784)
T PRK10787 408 QKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM----------- 475 (784)
T ss_pred HHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCH-HHEEEEEECCCC-----------
T ss_conf 99997489885665003555224558998899998459765564000322046452-225899732767-----------
Q ss_pred CCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 43899999999851224321004259983885668
Q gi|254781026|r 146 CIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 146 c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
T Consensus 476 ------------~-ip~pLlDRmE~i-~~~gYt~~ 496 (784)
T PRK10787 476 ------------N-IPAPLLDRMEVI-RLSGYTED 496 (784)
T ss_pred ------------C-CCHHHHHHEEEE-EECCCCHH
T ss_conf ------------7-876776312155-41167678