HHsearch alignment for GI: 254781026 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.95  E-value=2.1e-09  Score=76.00  Aligned_cols=128  Identities=23%  Similarity=0.375  Sum_probs=74.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCE--EECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHH
Q ss_conf             9777860599999998874889897885323000--00027888756531112020377521001102343456827998
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMI--YSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDS   78 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i--~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~   78 (186)
T Consensus       354 lvGpPGvGKTSl~~sIA~al~r----------~f~rislGGv~Dea-eirGHrr--------TY-------vgampGrii  407 (784)
T PRK10787        354 LVGPPGVGKTSLGQSIAKATGR----------KYVRMALGGVRDEA-EIRGHRR--------TY-------IGSMPGKLI  407 (784)
T ss_pred             EECCCCCCHHHHHHHHHHHHCC----------CEEEEECCCCCCHH-HHCCCCC--------CC-------CCCCCHHHH
T ss_conf             6469987724699999998589----------86998068878888-8256433--------43-------443683899


Q ss_pred             H------CCCCEEEEECHHHCCH----HHHHHHHHHHHCCCEE---EHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             2------7998899803878598----8999999999719523---0100307898470156752274658878898876
Q gi|254781026|r   79 L------AHNGVLFLDEIPEFSP----QTLNALRQPLETGECI---IARANRKISYPSRIQLIAAMNPCRCGMSNKDENV  145 (186)
Q Consensus        79 l------Ah~GVLflDE~~e~~~----~~l~~L~~~le~g~v~---i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~  145 (186)
T Consensus       408 ~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~~~Dl-S~v~Fi~TaN~~-----------  475 (784)
T PRK10787        408 QKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM-----------  475 (784)
T ss_pred             HHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEECCCCH-HHEEEEEECCCC-----------
T ss_conf             99997489885665003555224558998899998459765564000322046452-225899732767-----------


Q ss_pred             CCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf             43899999999851224321004259983885668
Q gi|254781026|r  146 CIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       146 c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~  180 (186)
T Consensus       476 ------------~-ip~pLlDRmE~i-~~~gYt~~  496 (784)
T PRK10787        476 ------------N-IPAPLLDRMEVI-RLSGYTED  496 (784)
T ss_pred             ------------C-CCHHHHHHEEEE-EECCCCHH
T ss_conf             ------------7-876776312155-41167678