HHsearch alignment for GI: 254781026 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.54 E-value=3.9e-14 Score=103.70 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 493 f~GPTGVGKTElak~LA~~L----~~~lir~------------DMSEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr~~ 556 (758)
T PRK11034 493 FAGPTGVGKTEVTVQLSKAL----GIELLRF------------DMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH 556 (758)
T ss_pred EECCCCCCHHHHHHHHHHHH----HHHHHCC------------CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 97899877799999999998----6677214------------2665312014777448998666767777012878739
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC-------CCCCCCCCCCCCCCCHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522746-------5887889887643899999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC-------RCGMSNKDENVCIRGPRCA 153 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc-------pcG~~~~~~~~c~c~~~~~ 153 (186)
T Consensus 557 PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~--NtiIImTSN~Ga~~~~~~~~gf~~~-----~~~~~~~ 629 (758)
T PRK11034 557 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR--NVVLVMTTNAGVRETERKSIGLIHQ-----DNSTDAM 629 (758)
T ss_pred CCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECE--EEEEEEECCCCHHHHHHHCCCCCCC-----CCHHHHH
T ss_conf 87799733675639899998873237783017999988440--0199982561748786421475542-----0359999
Q ss_pred HHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 9998512243210042599838856688
Q gi|254781026|r 154 TEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 154 ~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 630 ~~l~~~F~PEFlNRiD~ii~F~~L~~~~ 657 (758)
T PRK11034 630 EEIKKIFTPEFRNRLDNIIWFDHLSTDV 657 (758)
T ss_pred HHHHHHCCHHHHHHCCEEEEECCCCHHH
T ss_conf 9999547986772367478638899999