HHsearch alignment for GI: 254781026 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.22 E-value=1.7e-06 Score=58.85 Aligned_cols=96 Identities=24% Similarity=0.393 Sum_probs=58.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-----C----
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-----5----
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-----Q---- 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-----~---- 71 (186)
T Consensus 212 LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ld-----------------------l~~LiAGtkyRGefEeRlk 268 (758)
T PRK11034 212 LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-----------------------IGSLLAGTKYRGDFEKRFK 268 (758)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE-----------------------HHHHHCCCCCCHHHHHHHH
T ss_conf 21699986999999999999738997655898899845-----------------------8778616864154999999
Q ss_pred CCHHHHHHCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 6827998279988998038785---------98899999999971952301003078984701567522746
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEF---------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~---------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 269 ~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l---------------~~IgaTT~~ 325 (758)
T PRK11034 269 ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI---------------RVIGSTTYQ 325 (758)
T ss_pred HHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHH
T ss_conf 999999857985999804344226887677764678874578746972---------------399943779