HHsearch alignment for GI: 254781026 and conserved domain: PRK11331

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.60  E-value=2e-07  Score=64.29  Aligned_cols=112  Identities=21%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC------CCCCCCCH
Q ss_conf             977786059999999887488989788532300000027888756531112020377521001102------34345682
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI------GGGLQVLP   74 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~------gg~~~~~p   74 (186)
T Consensus       199 L~G~pGtGKT~lAk~lA~~l~-----------------g~~~--~~r---v~~VqfhpsysYEDfi~Gyrp~~~gf~~~~  256 (459)
T PRK11331        199 LQGPPGVGKTFVARRLAYLLT-----------------GEKA--PQR---VNMVQFHQSYSYEDFIQGYRPNGVGFRRKD  256 (459)
T ss_pred             EECCCCCCHHHHHHHHHHHHH-----------------CCCC--CCC---EEEEEECCCCCHHHHHCCCCCCCCCCEECC
T ss_conf             658999887899999999970-----------------7887--784---689983588661787646056888613268


Q ss_pred             HHHHH---------CCCCEEEEECHHHCCHH-HHHHHHHHHHCC-C-----EEEHH---CCEEEEECCCEEEEEECCCC
Q ss_conf             79982---------79988998038785988-999999999719-5-----23010---03078984701567522746
Q gi|254781026|r   75 GEDSL---------AHNGVLFLDEIPEFSPQ-TLNALRQPLETG-E-----CIIAR---ANRKISYPSRIQLIAAMNPC  134 (186)
Q Consensus        75 G~i~l---------Ah~GVLflDE~~e~~~~-~l~~L~~~le~g-~-----v~i~R---~g~~~~~Pa~f~Lvaa~NPc  134 (186)
T Consensus       257 G~f~~~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNta  335 (459)
T PRK11331        257 GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTA  335 (459)
T ss_pred             CHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCC
T ss_conf             3699999999849898769998432033889999999999641256765225630036888533468865999850334