HHsearch alignment for GI: 254781026 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=99.36 E-value=2.3e-12 Score=93.26 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECC-----CCCCCHHHCCC----CCCC
Q ss_conf 97778605999999988748898978853230000002788875653111202037-----75210011023----4345
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSP-----HHSVTIAALIG----GGLQ 71 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~-----~~~~~~~~l~g----g~~~ 71 (186)
T Consensus 353 I~GE~GtGKe~lAraIH~~S~r--------------------~~------~pfv~vnC~ai~~~~~e~elfG~~~~~~~~ 406 (639)
T PRK11388 353 LCGEEGVGKALLAQAIHNESER--------------------AA------GPYIAVNCQLLPDEALAEEFLGSDRTDSEN 406 (639)
T ss_pred EECCCCCCHHHHHHHHHHCCCC--------------------CC------CCEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 8898981099999999955777--------------------89------981898789898467899873877676434
Q ss_pred CCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 72 VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 72 ~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 407 g~~g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~--~r~g~~~~~~vdvRiiaat~~~ 467 (639)
T PRK11388 407 GRLSKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVI--TRLDSRRLIPVDVRVIATTTAD 467 (639)
T ss_pred CCCCHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCE--EECCCCCEEEEEEEEEEECCHH
T ss_conf 668624403698288467264999999999999865937--8569994666427999736450