HHsearch alignment for GI: 254781026 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=99.20 E-value=6.3e-11 Score=84.89 Aligned_cols=105 Identities=29% Similarity=0.418 Sum_probs=75.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC-----CCCCHHHCCC-------C
Q ss_conf 977786059999999887488989788532300000027888756531112020377-----5210011023-------4
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH-----HSVTIAALIG-------G 68 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~-----~~~~~~~l~g-------g 68 (186)
T Consensus 34 I~GE~GtGK~~~Ar~IH~~S~r~--------------------~------~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~ 87 (325)
T PRK11608 34 IIGERGTGKELIASRLHYLSSRW--------------------Q------GPFISLNCAALNENLLDSELFGHEAGAFTG 87 (325)
T ss_pred EECCCCCCHHHHHHHHHHCCCCC--------------------C------CCCEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 88989837999999999658867--------------------9------997788779899778899872775567677
Q ss_pred CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 34568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r 69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
T Consensus 88 ~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~--~~r~g~~~~~~~~~RiIa~t~~ 150 (325)
T PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE--LERVGGSQPLQVNVRLVCATNA 150 (325)
T ss_pred CCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCC--EEECCCCCCCCCCEEEEECCCH
T ss_conf 53246873435689869973745479999999999986490--8857998766564688713322