HHsearch alignment for GI: 254781026 and conserved domain: PRK11608

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=99.20  E-value=6.3e-11  Score=84.89  Aligned_cols=105  Identities=29%  Similarity=0.418  Sum_probs=75.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCC-----CCCCHHHCCC-------C
Q ss_conf             977786059999999887488989788532300000027888756531112020377-----5210011023-------4
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPH-----HSVTIAALIG-------G   68 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~-----~~~~~~~l~g-------g   68 (186)
T Consensus        34 I~GE~GtGK~~~Ar~IH~~S~r~--------------------~------~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~   87 (325)
T PRK11608         34 IIGERGTGKELIASRLHYLSSRW--------------------Q------GPFISLNCAALNENLLDSELFGHEAGAFTG   87 (325)
T ss_pred             EECCCCCCHHHHHHHHHHCCCCC--------------------C------CCCEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf             88989837999999999658867--------------------9------997788779899778899872775567677


Q ss_pred             CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf             34568279982799889980387859889999999997195230100307898470156752274
Q gi|254781026|r   69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP  133 (186)
Q Consensus        69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP  133 (186)
T Consensus        88 ~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~--~~r~g~~~~~~~~~RiIa~t~~  150 (325)
T PRK11608         88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGE--LERVGGSQPLQVNVRLVCATNA  150 (325)
T ss_pred             CCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCC--EEECCCCCCCCCCEEEEECCCH
T ss_conf             53246873435689869973745479999999999986490--8857998766564688713322