HHsearch alignment for GI: 254781026 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=96.91 E-value=0.0012 Score=42.09 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=57.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHH----------HHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCC-CHHHCCCCC
Q ss_conf 97778605999999988748898978----------8532300000027888756531112020377521-001102343
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLE----------ESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSV-TIAALIGGG 69 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~----------e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~-~~~~l~gg~ 69 (186)
T Consensus 43 f~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~-~i~~g~~-~d~~EiD----aas~~~v~~~r~l~~~- 115 (721)
T PRK12323 43 FTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT-EIDAGRF-VDYIEMD----AASNRGVDEMAQLLDQ- 115 (721)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH-HHHCCCC-CCEEEEE----CCCCCCHHHHHHHHHH-
T ss_conf 0279988898999999999768998667898788787765468-7756898-7647743----6767888999999985-
Q ss_pred CCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 45682799827998899803878598899999999971952301003078984701567522746
Q gi|254781026|r 70 LQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 70 ~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 116 ~~y~P---~~~~~KvyiiDevhmls~~afnalLKtlEePP~hv-----------~F-ilaTT~~~ 165 (721)
T PRK12323 116 AVYAP---TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV-----------KF-ILATTDPQ 165 (721)
T ss_pred CCCCC---CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCE-----------EE-EEECCCHH
T ss_conf 45588---76644699985400058999999998401797553-----------89-99438634