HHsearch alignment for GI: 254781026 and conserved domain: PRK12377

>PRK12377 putative replication protein; Provisional.
Probab=95.26  E-value=0.0078  Score=37.39  Aligned_cols=124  Identities=20%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-HH
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799-82
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-SL   79 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~l   79 (186)
T Consensus       106 f~G~pGtGKTHLA~AIg~~a--------~~-------~G~---sVlF~t~~d-----Lv~~L~~a~~~g-~~~~k~l~~l  161 (248)
T PRK12377        106 FSGKPGTGKNHLAAAIGNRL--------LA-------KGR---SVIVVTVPD-----VMSRLHESYDNG-QSGEKFLQEL  161 (248)
T ss_pred             EECCCCCCHHHHHHHHHHHH--------HH-------CCC---EEEEEEHHH-----HHHHHHHHHHCC-CCHHHHHHHH
T ss_conf             98999987889999999999--------98-------799---699988999-----999999999848-5099999997


Q ss_pred             CCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             799889980387--859889999999997195230100307898470156752274658878898876438999999998
Q gi|254781026|r   80 AHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQ  157 (186)
Q Consensus        80 Ah~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~  157 (186)
T Consensus       162 ~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~------------~~ks~IiTTNL~f~ew------------------~  211 (248)
T PRK12377        162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTA------------SMRSVGMLTNLNHEAM------------------S  211 (248)
T ss_pred             HCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCHHHH------------------H
T ss_conf             338989860005788986799999999999985------------5798689758997799------------------8


Q ss_pred             HHCCHHHHHCCC----EEEECCCCC
Q ss_conf             512243210042----599838856
Q gi|254781026|r  158 ARISGPLMDRID----IRIAVPSRT  178 (186)
Q Consensus       158 ~rls~plldR~D----l~v~~~~~~  178 (186)
T Consensus       212 ~ilgdailDRL~~h~~~~i~f~GeS  236 (248)
T PRK12377        212 TLLGERVMDRMTMNGGRWVNFNWES  236 (248)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             8875999999986693499861731