HHsearch alignment for GI: 254781026 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=98.56  E-value=3.7e-07  Score=62.79  Aligned_cols=65  Identities=15%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r   80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR  159 (186)
Q Consensus        80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r  159 (186)
T Consensus       124 ~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~-----------~~fIl~t~-~~------------------------~~  167 (337)
T PRK12402        124 ADYKLILFDNAEALREDAQQALRRIMERYSET-----------CRFIFSTT-QP------------------------SK  167 (337)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC-----------EEEEEECC-CC------------------------CC
T ss_conf             88049997071317999999999887408876-----------69987238-64------------------------44


Q ss_pred             CCHHHHHCCCEEEECCCCCHHH
Q ss_conf             2243210042599838856688
Q gi|254781026|r  160 ISGPLMDRIDIRIAVPSRTHIR  181 (186)
Q Consensus       160 ls~plldR~Dl~v~~~~~~~~~  181 (186)
T Consensus       168 ii~tI~SRC-~~i~F~~~s~~~  188 (337)
T PRK12402        168 LIPPIRSRC-LPLFFRPVPDDE  188 (337)
T ss_pred             CCHHHHHHC-EEEECCCCCHHH
T ss_conf             752477624-454358989999