HHsearch alignment for GI: 254781026 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=98.56 E-value=3.7e-07 Score=62.79 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79988998038785988999999999719523010030789847015675227465887889887643899999999851
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQAR 159 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~r 159 (186)
T Consensus 124 ~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~-----------~~fIl~t~-~~------------------------~~ 167 (337)
T PRK12402 124 ADYKLILFDNAEALREDAQQALRRIMERYSET-----------CRFIFSTT-QP------------------------SK 167 (337)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC-----------EEEEEECC-CC------------------------CC
T ss_conf 88049997071317999999999887408876-----------69987238-64------------------------44
Q ss_pred CCHHHHHCCCEEEECCCCCHHH
Q ss_conf 2243210042599838856688
Q gi|254781026|r 160 ISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 160 ls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 168 ii~tI~SRC-~~i~F~~~s~~~ 188 (337)
T PRK12402 168 LIPPIRSRC-LPLFFRPVPDDE 188 (337)
T ss_pred CCHHHHHHC-EEEECCCCCHHH
T ss_conf 752477624-454358989999