HHsearch alignment for GI: 254781026 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.43 E-value=2.5e-13 Score=99.01 Aligned_cols=58 Identities=29% Similarity=0.409 Sum_probs=44.8
Q ss_pred CEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 8899803878598899999999971952301003078984701567522--74658878898876438999999998512
Q gi|254781026|r 83 GVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 83 GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
T Consensus 111 tILFIDEIHRfNK~QQD~LLp~vE~G~i---------------~LIGATTENP~----F-------------------~v 152 (726)
T PRK13341 111 TILFIDEVHRFNKAQQDALLPWVENGTV---------------TLIGATTENPY----F-------------------EV 152 (726)
T ss_pred EEEEEECHHHCCHHHHHHHHHHHCCCEE---------------EEEEECCCCCC----E-------------------EE
T ss_conf 5999862542588789987888606838---------------99970478974----3-------------------64
Q ss_pred CHHHHHCCCEEEECCCCCH
Q ss_conf 2432100425998388566
Q gi|254781026|r 161 SGPLMDRIDIRIAVPSRTH 179 (186)
Q Consensus 161 s~plldR~Dl~v~~~~~~~ 179 (186)
T Consensus 153 n~ALlSR~~vf~L~-~L~~ 170 (726)
T PRK13341 153 NKALVSRSRLFRLK-SLED 170 (726)
T ss_pred CHHHHHHCEEEEEC-CCCH
T ss_conf 29888323466743-8999