HHsearch alignment for GI: 254781026 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.43  E-value=2.5e-13  Score=99.01  Aligned_cols=58  Identities=29%  Similarity=0.409  Sum_probs=44.8

Q ss_pred             CEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             8899803878598899999999971952301003078984701567522--74658878898876438999999998512
Q gi|254781026|r   83 GVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEYQARI  160 (186)
Q Consensus        83 GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl  160 (186)
T Consensus       111 tILFIDEIHRfNK~QQD~LLp~vE~G~i---------------~LIGATTENP~----F-------------------~v  152 (726)
T PRK13341        111 TILFIDEVHRFNKAQQDALLPWVENGTV---------------TLIGATTENPY----F-------------------EV  152 (726)
T ss_pred             EEEEEECHHHCCHHHHHHHHHHHCCCEE---------------EEEEECCCCCC----E-------------------EE
T ss_conf             5999862542588789987888606838---------------99970478974----3-------------------64


Q ss_pred             CHHHHHCCCEEEECCCCCH
Q ss_conf             2432100425998388566
Q gi|254781026|r  161 SGPLMDRIDIRIAVPSRTH  179 (186)
Q Consensus       161 s~plldR~Dl~v~~~~~~~  179 (186)
T Consensus       153 n~ALlSR~~vf~L~-~L~~  170 (726)
T PRK13341        153 NKALVSRSRLFRLK-SLED  170 (726)
T ss_pred             CHHHHHHCEEEEEC-CCCH
T ss_conf             29888323466743-8999