HHsearch alignment for GI: 254781026 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.39 E-value=1.4e-12 Score=94.50 Aligned_cols=111 Identities=26% Similarity=0.390 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 42 l~GPPG~GKTTlA~iiA~~~~~----------~f~~lnA~~~gv~---------------dir~ii~~a~~-----~~~~ 91 (417)
T PRK13342 42 LWGPPGTGKTTLARIIAGATDA----------EFEALSAVTSGVK---------------DLREVIEEAKQ-----SRLG 91 (417)
T ss_pred EECCCCCCHHHHHHHHHHHHCC----------CEEEEECCCCCHH---------------HHHHHHHHHHH-----HHCC
T ss_conf 8896999899999999998689----------8899614103889---------------99999999886-----3148
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 998899803878598899999999971952301003078984701567522--746588788988764389999999985
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
T Consensus 92 ~~tilfiDEIHRfnK~QQD~LLp~vE~g~i---------------iLIgATTENP~f----------------------- 133 (417)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSF----------------------- 133 (417)
T ss_pred CCEEEEEECHHHCCHHHHHHHHHHHHCCCE---------------EEEEECCCCCHH-----------------------
T ss_conf 965999978200588999999875112656---------------999741579225-----------------------
Q ss_pred HCCHHHHHCCCEEEECCCCCHH
Q ss_conf 1224321004259983885668
Q gi|254781026|r 159 RISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 159 rls~plldR~Dl~v~~~~~~~~ 180 (186)
T Consensus 134 ~in~aLlSRc~vf-~l~~L~~~ 154 (417)
T PRK13342 134 EVNPALLSRAQVF-ELKPLSEE 154 (417)
T ss_pred HCCHHHHHHHHHE-ECCCCCHH
T ss_conf 3489898565700-20589999