HHsearch alignment for GI: 254781026 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.39  E-value=1.4e-12  Score=94.50  Aligned_cols=111  Identities=26%  Similarity=0.390  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus        42 l~GPPG~GKTTlA~iiA~~~~~----------~f~~lnA~~~gv~---------------dir~ii~~a~~-----~~~~   91 (417)
T PRK13342         42 LWGPPGTGKTTLARIIAGATDA----------EFEALSAVTSGVK---------------DLREVIEEAKQ-----SRLG   91 (417)
T ss_pred             EECCCCCCHHHHHHHHHHHHCC----------CEEEEECCCCCHH---------------HHHHHHHHHHH-----HHCC
T ss_conf             8896999899999999998689----------8899614103889---------------99999999886-----3148


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             998899803878598899999999971952301003078984701567522--746588788988764389999999985
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAM--NPCRCGMSNKDENVCIRGPRCATEYQA  158 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~--NPcpcG~~~~~~~~c~c~~~~~~~Y~~  158 (186)
T Consensus        92 ~~tilfiDEIHRfnK~QQD~LLp~vE~g~i---------------iLIgATTENP~f-----------------------  133 (417)
T PRK13342         92 RRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSF-----------------------  133 (417)
T ss_pred             CCEEEEEECHHHCCHHHHHHHHHHHHCCCE---------------EEEEECCCCCHH-----------------------
T ss_conf             965999978200588999999875112656---------------999741579225-----------------------


Q ss_pred             HCCHHHHHCCCEEEECCCCCHH
Q ss_conf             1224321004259983885668
Q gi|254781026|r  159 RISGPLMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       159 rls~plldR~Dl~v~~~~~~~~  180 (186)
T Consensus       134 ~in~aLlSRc~vf-~l~~L~~~  154 (417)
T PRK13342        134 EVNPALLSRAQVF-ELKPLSEE  154 (417)
T ss_pred             HCCHHHHHHHHHE-ECCCCCHH
T ss_conf             3489898565700-20589999