HHsearch alignment for GI: 254781026 and conserved domain: PRK13531

>PRK13531 regulatory ATPase RavA; Provisional.
Probab=99.20  E-value=5.3e-12  Score=91.19  Aligned_cols=141  Identities=28%  Similarity=0.354  Sum_probs=91.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC-CCCC-CCCHHHHH
Q ss_conf             977786059999999887488989788532300000027888756531112020377521001102-3434-56827998
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI-GGGL-QVLPGEDS   78 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~-gg~~-~~~pG~i~   78 (186)
T Consensus        44 llGPPGtAKS~larrl~~~~~~a~~FeyLltRF-------stPeE-lF---------GP~si~~Lk~~g~y~R~t~G~LP  106 (498)
T PRK13531         44 LLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF-------STPEE-VF---------GPLSIQALKDEGRYERLTSGYLP  106 (498)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC-------CCHHH-HC---------CCCCHHHHHHCCEEEEECCCCCC
T ss_conf             888995138899999999855740899998746-------98888-53---------83329987117848972267588


Q ss_pred             HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             27998899803878598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r   79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA  158 (186)
Q Consensus        79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~  158 (186)
T Consensus       107 ~A~--iaFLDEIfKansAILNtLLtilNEr~f--~nG~~~~~vPL~-~li~ASNElP~~~~~------------------  163 (498)
T PRK13531        107 EAE--IVFLDEIWKAGPAILNTLLTAINERRF--RNGAHEEKIPMR-LLVAASNELPEADSS------------------  163 (498)
T ss_pred             CCE--EEHHHHHHHCCHHHHHHHHHHHHHHEE--CCCCCEECCCHH-HHHHCCCCCCCCCCC------------------
T ss_conf             661--315787861488999999998646403--479831304468-864304679999840------------------


Q ss_pred             HCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf             1224321004259983885668885
Q gi|254781026|r  159 RISGPLMDRIDIRIAVPSRTHIRSF  183 (186)
Q Consensus       159 rls~plldR~Dl~v~~~~~~~~~~~  183 (186)
T Consensus       164 -L-~AlyDRfL~R~~v~~v~~~~nF  186 (498)
T PRK13531        164 -L-EALYDRMLIRLWLDKVQDKANF  186 (498)
T ss_pred             -H-HHHHHHHHHHEECCCCCCHHHH
T ss_conf             -7-8888764410223131676679