HHsearch alignment for GI: 254781026 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=99.20 E-value=5.3e-12 Score=91.19 Aligned_cols=141 Identities=28% Similarity=0.354 Sum_probs=91.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCC-CCCC-CCCHHHHH
Q ss_conf 977786059999999887488989788532300000027888756531112020377521001102-3434-56827998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALI-GGGL-QVLPGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~-gg~~-~~~pG~i~ 78 (186)
T Consensus 44 llGPPGtAKS~larrl~~~~~~a~~FeyLltRF-------stPeE-lF---------GP~si~~Lk~~g~y~R~t~G~LP 106 (498)
T PRK13531 44 LLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF-------STPEE-VF---------GPLSIQALKDEGRYERLTSGYLP 106 (498)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC-------CCHHH-HC---------CCCCHHHHHHCCEEEEECCCCCC
T ss_conf 888995138899999999855740899998746-------98888-53---------83329987117848972267588
Q ss_pred HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 27998899803878598899999999971952301003078984701567522746588788988764389999999985
Q gi|254781026|r 79 LAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQA 158 (186)
Q Consensus 79 lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~ 158 (186)
T Consensus 107 ~A~--iaFLDEIfKansAILNtLLtilNEr~f--~nG~~~~~vPL~-~li~ASNElP~~~~~------------------ 163 (498)
T PRK13531 107 EAE--IVFLDEIWKAGPAILNTLLTAINERRF--RNGAHEEKIPMR-LLVAASNELPEADSS------------------ 163 (498)
T ss_pred CCE--EEHHHHHHHCCHHHHHHHHHHHHHHEE--CCCCCEECCCHH-HHHHCCCCCCCCCCC------------------
T ss_conf 661--315787861488999999998646403--479831304468-864304679999840------------------
Q ss_pred HCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 1224321004259983885668885
Q gi|254781026|r 159 RISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 159 rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
T Consensus 164 -L-~AlyDRfL~R~~v~~v~~~~nF 186 (498)
T PRK13531 164 -L-EALYDRMLIRLWLDKVQDKANF 186 (498)
T ss_pred -H-HHHHHHHHHHEECCCCCCHHHH
T ss_conf -7-8888764410223131676679