HHsearch alignment for GI: 254781026 and conserved domain: PRK13765
>PRK13765 ATP-dependent protease Lon; Provisional.
Probab=99.84 E-value=1.6e-20 Score=141.11 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=76.9
Q ss_pred CCEEECCCCCCCHHHCCCCCCC---------------CCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 1202037752100110234345---------------6827998279988998038785988999999999719523010
Q gi|254781026|r 50 NRPFRSPHHSVTIAALIGGGLQ---------------VLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR 114 (186)
Q Consensus 50 ~~p~~~~~~~~~~~~l~gg~~~---------------~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R 114 (186)
T Consensus 181 ~aPfvdA-tga~a~aLlGdVrHdP~qsGGlgTPah~Rv~aGAiHkA~gGvL~IDei~~L~~~~q~~Ll~alq~~k~~I~g 259 (637)
T PRK13765 181 TAPFVDA-TGAHAGALLGDVRHDPFQSGGLETPAHERVEAGAIHKAHKGVLFIDEINTLRLESQQSLLTAMQEKKYPITG 259 (637)
T ss_pred CCCEECC-CCCCHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCEECCC
T ss_conf 8983307-874446651774248633489899961000266121135856998445647988999999999659153236
Q ss_pred CCEE--------EEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCC---EEEECC
Q ss_conf 0307--------898470156752274658878898876438999999998512243210042---599838
Q gi|254781026|r 115 ANRK--------ISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARISGPLMDRID---IRIAVP 175 (186)
Q Consensus 115 ~g~~--------~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rls~plldR~D---l~v~~~ 175 (186)
T Consensus 260 ~~e~SsgA~v~tepvP~Df~lV~aGn~d~---------------------~~~m~palrsri~g~gyev~~~ 310 (637)
T PRK13765 260 QSERSSGAMVRTEPVPCDFIMVAAGNLDA---------------------IENMHPALRSRIRGYGYEVYMN 310 (637)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCHHH---------------------HHHCCHHHHHHHHCCCEEEEEC
T ss_conf 88666776257898661369999537276---------------------6643998886510477499823