HHsearch alignment for GI: 254781026 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=92.15 E-value=0.12 Score=30.54 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCC---CCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH
Q ss_conf 977786059999999887488989788532300000027888756---53111202037752100110234345682799
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEY---SFIQNRPFRSPHHSVTIAALIGGGLQVLPGED 77 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~---~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i 77 (186)
T Consensus 402 VvG~AGaGKStmL~aARea---------wEa~G-yrV~GaALsGkAAegLe~~sGI----~SrTlAs~---e~~w~~gr~ 464 (1102)
T PRK13826 402 VIGRAGAGKTTMMKAAREA---------WEAAG-YRVVGGALAGKAAEGLEKEAGI----ASRTLSSW---ELRWNQGRD 464 (1102)
T ss_pred EEECCCCCHHHHHHHHHHH---------HHHCC-CEEEEECCCHHHHHHHHHCCCC----CCHHHHHH---HHHHCCCCC
T ss_conf 9842888788999999999---------99779-7798015007899977534695----30338999---987435865
Q ss_pred HHCCCCEEEEECHHHCCHHHHHHHHHHHHCC
Q ss_conf 8279988998038785988999999999719
Q gi|254781026|r 78 SLAHNGVLFLDEIPEFSPQTLNALRQPLETG 108 (186)
Q Consensus 78 ~lAh~GVLflDE~~e~~~~~l~~L~~~le~g 108 (186)
T Consensus 465 ~L~~~dVlVIDEAGMVgsrqmarvl~~ae~a 495 (1102)
T PRK13826 465 QLDNKTVFVLDEAGMVSSRQMALFVEAVTRA 495 (1102)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 5678738998455565579999999999975