HHsearch alignment for GI: 254781026 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.65  E-value=4.1e-08  Score=68.39  Aligned_cols=102  Identities=26%  Similarity=0.434  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-C-------C
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434-5-------6
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-Q-------V   72 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-~-------~   72 (186)
T Consensus       157 LiGPTGSGKTLLAqTLA~~L~V-Pf----------AiA-----D------------ATtLTEAGYVGEDVENIL~~Llq~  208 (452)
T TIGR00382       157 LIGPTGSGKTLLAQTLARILNV-PF----------AIA-----D------------ATTLTEAGYVGEDVENILLKLLQA  208 (452)
T ss_pred             EECCCCCCHHHHHHHHHHHCCC-CE----------EEC-----C------------HHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             5468885268999999987388-74----------211-----1------------110200664242288999999874


Q ss_pred             CHHHHHHCCCCEEEEECHHHCCH--------------HHHHHHHHHHHCCCEEEH-HCCEEEEEC-CCEEEEEECC
Q ss_conf             82799827998899803878598--------------899999999971952301-003078984-7015675227
Q gi|254781026|r   73 LPGEDSLAHNGVLFLDEIPEFSP--------------QTLNALRQPLETGECIIA-RANRKISYP-SRIQLIAAMN  132 (186)
Q Consensus        73 ~pG~i~lAh~GVLflDE~~e~~~--------------~~l~~L~~~le~g~v~i~-R~g~~~~~P-a~f~Lvaa~N  132 (186)
T Consensus       209 ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRK--HP~~~~iqiDTs~  282 (452)
T TIGR00382       209 ADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK--HPQQEFIQIDTSN  282 (452)
T ss_pred             CCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCC--CCCCCEEEECCCC
T ss_conf             1455245278508984223101215778011221755499999987603234317544886--8865768864764