HHsearch alignment for GI: 254781026 and conserved domain: TIGR00390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.27 E-value=0.00012 Score=48.08 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=47.9
Q ss_pred CCCCEEEEECHHHCCHHH-------------HHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEE--CCCCCCCCCCCCCC
Q ss_conf 799889980387859889-------------999999997195230100307898470156752--27465887889887
Q gi|254781026|r 80 AHNGVLFLDEIPEFSPQT-------------LNALRQPLETGECIIARANRKISYPSRIQLIAA--MNPCRCGMSNKDEN 144 (186)
Q Consensus 80 Ah~GVLflDE~~e~~~~~-------------l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa--~NPcpcG~~~~~~~ 144 (186)
T Consensus 267 E~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlL-PiVEGS~V~TKyG~VkT--dHiLFIAaGAF~lA-----KPSD- 337 (463)
T TIGR00390 267 EQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLL-PIVEGSTVNTKYGSVKT--DHILFIAAGAFHLA-----KPSD- 337 (463)
T ss_pred HHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEECCEEEC--CHHHHHHHHHHCCC-----CCCC-
T ss_conf 847828985303542168886788876556510114-20226664310010422--15787675232027-----7766-
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHH
Q ss_conf 6438999999998512243210042599838856688
Q gi|254781026|r 145 VCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHIR 181 (186)
Q Consensus 145 ~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~ 181 (186)
T Consensus 338 ---------------LIPELQGRfPirVEL~~Lt~~d 359 (463)
T TIGR00390 338 ---------------LIPELQGRFPIRVELEALTVDD 359 (463)
T ss_pred ---------------CCCHHHCCCCHHHHHHHHHHHH
T ss_conf ---------------6631106673778767632999