HHsearch alignment for GI: 254781026 and conserved domain: TIGR00602

>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=95.36  E-value=0.0078  Score=37.40  Aligned_cols=110  Identities=18%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCC---CC-HHHCCCCC---CCCC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752---10-01102343---4568
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHS---VT-IAALIGGG---LQVL   73 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~---~~-~~~l~gg~---~~~~   73 (186)
T Consensus       123 i~GPsGCgKsT~~k~LsKelg-~~~~ew~Np~~~~~~~n~~--k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~~lQ~  199 (670)
T TIGR00602       123 ITGPSGCGKSTTIKILSKELG-IKVQEWLNPVLLKEQKNDE--KDTLSLESKFSRFPYLSQIEVFSEFLLRATKYNKLQK  199 (670)
T ss_pred             EECCCCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCHH--HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             417558844789999988864-4565540787888885124--4442125402216763145546787642123466642


Q ss_pred             HHHHHHCCCCEEEEECHH---HCCHHHH-HHHHHHHHCCCEEEH
Q ss_conf             279982799889980387---8598899-999999971952301
Q gi|254781026|r   74 PGEDSLAHNGVLFLDEIP---EFSPQTL-NALRQPLETGECIIA  113 (186)
Q Consensus        74 pG~i~lAh~GVLflDE~~---e~~~~~l-~~L~~~le~g~v~i~  113 (186)
T Consensus       200 lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~~~~~~g  243 (670)
T TIGR00602       200 LGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRTKYVSEG  243 (670)
T ss_pred             CCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             14110247545772137640221366126899999999862378