HHsearch alignment for GI: 254781026 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.64 E-value=2.2e-16 Score=116.90 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=80.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 35 L~GPPGLGKTTLA~IiA~Emg----------~~l~iTsGP-----~------------L~kPgDlaaiLt~-------L~ 80 (305)
T TIGR00635 35 LYGPPGLGKTTLAHIIANEMG----------VNLKITSGP-----A------------LEKPGDLAAILTN-------LE 80 (305)
T ss_pred EECCCCCCHHHHHHHHHHHHC----------CCCEEEECC-----C------------CCCHHHHHHHHHH-------CC
T ss_conf 317568746789999999838----------932674067-----5------------5475789999970-------56
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHH----CCEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9988998038785988999999999719523010----03078984-701567522746588788988764389999999
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIAR----ANRKISYP-SRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE 155 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R----~g~~~~~P-a~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~ 155 (186)
T Consensus 81 ~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~--------------------- 139 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA--------------------- 139 (305)
T ss_pred CCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCC---------------------
T ss_conf 89631012565048334531053001217877871289852576068694420000347---------------------
Q ss_pred HHHHCCHHHHHCCCEEEECC
Q ss_conf 98512243210042599838
Q gi|254781026|r 156 YQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 156 Y~~rls~plldR~Dl~v~~~ 175 (186)
T Consensus 140 --G~lt~PLrdRFG~~~rl~ 157 (305)
T TIGR00635 140 --GMLTSPLRDRFGIILRLE 157 (305)
T ss_pred --CCCCCCHHHHHHHHHHCC
T ss_conf --741031334544745402