HHsearch alignment for GI: 254781026 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.49  E-value=4.4e-07  Score=62.33  Aligned_cols=118  Identities=26%  Similarity=0.394  Sum_probs=75.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       161 LyGPPGtGKTLlAKAvA~et---------~ATFIrvV-------------------g-SElV~KyIGEGArLV~~~F~LA  211 (364)
T TIGR01242       161 LYGPPGTGKTLLAKAVAHET---------NATFIRVV-------------------G-SELVRKYIGEGARLVREVFELA  211 (364)
T ss_pred             EECCCCCCHHHHHHHHHCCC---------CCEEEEEE-------------------H-HHHHHHHHCCHHHHHHHHHHHH
T ss_conf             00757976889999863145---------51268860-------------------4-4444444133168999999985


Q ss_pred             C---CCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             9---988998038785-----------98899999999971952301003078984701567522746588788988764
Q gi|254781026|r   81 H---NGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVC  146 (186)
Q Consensus        81 h---~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c  146 (186)
T Consensus       212 kEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~r--------g~VkviaATNR~---Di-------  273 (364)
T TIGR01242       212 KEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPR--------GNVKVIAATNRP---DI-------  273 (364)
T ss_pred             HCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC--------CCEEEEEECCCC---HH-------
T ss_conf             306981686101333543211467787315788999999752488876--------761688720762---02-------


Q ss_pred             CCCHHHHHHHHHHCCHHHH--HCCCEEEECCCCC
Q ss_conf             3899999999851224321--0042599838856
Q gi|254781026|r  147 IRGPRCATEYQARISGPLM--DRIDIRIAVPSRT  178 (186)
Q Consensus       147 ~c~~~~~~~Y~~rls~pll--dR~Dl~v~~~~~~  178 (186)
T Consensus       274 -------------lDPA~LRPGRFDR~IEVPlP~  294 (364)
T TIGR01242       274 -------------LDPAILRPGRFDRIIEVPLPD  294 (364)
T ss_pred             -------------CCCCCCCCCCCCCEEECCCCC
T ss_conf             -------------043214888613257316978