HHsearch alignment for GI: 254781026 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=95.17 E-value=0.0096 Score=36.87 Aligned_cols=17 Identities=41% Similarity=0.948 Sum_probs=9.9
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 97778605999999988
Q gi|254781026|r 1 MIGPPGARKSMLASCLP 17 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~ 17 (186)
T Consensus 580 l~GPPGtGktllakava 596 (980)
T TIGR01243 580 LFGPPGTGKTLLAKAVA 596 (980)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 74689861688888774