HHsearch alignment for GI: 254781026 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=95.17  E-value=0.0096  Score=36.87  Aligned_cols=17  Identities=41%  Similarity=0.948  Sum_probs=9.9

Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             97778605999999988
Q gi|254781026|r    1 MIGPPGARKSMLASCLP   17 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~   17 (186)
T Consensus       580 l~GPPGtGktllakava  596 (980)
T TIGR01243       580 LFGPPGTGKTLLAKAVA  596 (980)
T ss_pred             EECCCCCCHHHHHHHHH
T ss_conf             74689861688888774