HHsearch alignment for GI: 254781026 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=94.20 E-value=0.021 Score=34.85 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCC--HHHHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434568--27998
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVL--PGEDS 78 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~--pG~i~ 78 (186)
T Consensus 245 l~GPPGtGktllaka~ane~~----------a~f~~inGPe------------------imsky~Ge~e~~lr~if~eae 296 (980)
T TIGR01243 245 LYGPPGTGKTLLAKAVANEAG----------AYFIAINGPE------------------IMSKYYGESEERLREIFKEAE 296 (980)
T ss_pred EECCCCCCHHHHHHHHHHHCC----------CEEEEECCCH------------------HHHHHCCCCHHHHHHHHHHHH
T ss_conf 755898617899999875305----------5178850603------------------443313630789999998653
Q ss_pred HCCCCEEEEECHHHC-----------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCC
Q ss_conf 279988998038785-----------98899999999971952301003078984701567522746
Q gi|254781026|r 79 LAHNGVLFLDEIPEF-----------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPC 134 (186)
Q Consensus 79 lAh~GVLflDE~~e~-----------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPc 134 (186)
T Consensus 297 enaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGl-----------k~rG~v~viGatnrP 352 (980)
T TIGR01243 297 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-----------KGRGKVIVIGATNRP 352 (980)
T ss_pred HCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-----------CCCCEEEEEECCCCC
T ss_conf 05870787412110076410000168899999999997400-----------248728998146885