HHsearch alignment for GI: 254781026 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.65 E-value=0.002 Score=40.93 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-----HHHH-HHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCH
Q ss_conf 977786059999999887488989-----7885-3230000002788875653111202037752100110234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS-----LEES-LEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~-----~~e~-le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~p 74 (186)
T Consensus 370 LTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl---~E~TG~~a~TIHRLlG~~~~~~~~ 446 (769)
T TIGR01448 370 LTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL---AEVTGLEALTIHRLLGYGSDTKSE 446 (769)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC---CCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 85778886168999999999871687755312456776488737743788851---100262123477863689888732
Q ss_pred H--HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf 7--998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r 75 G--EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN 132 (186)
Q Consensus 75 G--~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N 132 (186)
T Consensus 447 ~k~~~~~~~~DL~IvDE~SM~Dt~L~~~lL~a~P~~--------------a~lllVGD~D 492 (769)
T TIGR01448 447 NKNLEDPIDADLLIVDESSMVDTWLASSLLAAVPDH--------------ARLLLVGDAD 492 (769)
T ss_pred CHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC--------------CEEEEECCCC
T ss_conf 110113478776998146218899999998617977--------------7798883768