HHsearch alignment for GI: 254781026 and conserved domain: TIGR01526
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=93.98 E-value=0.037 Score=33.47 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
T Consensus 181 lG~eStGKstLv~~lA~~~nt~~~~E---yar~y~e~~~ggDe~~L~----------~~dY~~~~~G~~~~~~~~v~~a~ 247 (346)
T TIGR01526 181 LGGESTGKSTLVNKLAEKLNTTSAWE---YAREYVEAKLGGDEIALQ----------YSDYARIVLGQIDYIDAAVRDAD 247 (346)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCHH---HHHHHHHHHCCCCHHHHH----------CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 55888636899999999846887125---655666651687214542----------03437876424667778630732
Q ss_pred -CCEEEEECHHHCCHHHHHHHH---------HHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf -988998038785988999999---------9997195230100307898470156752274658878898876438999
Q gi|254781026|r 82 -NGVLFLDEIPEFSPQTLNALR---------QPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 82 -~GVLflDE~~e~~~~~l~~L~---------~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
T Consensus 248 nq~v~f~DTD~i-~T~vfa~~y~G~eDfeql~P~~~~~--------i~~~r~DL~ll~~p~t-e---w~~Dg~R~l~~~~ 314 (346)
T TIGR01526 248 NQKVAFIDTDFI-TTQVFAKLYEGREDFEQLHPFLKKT--------IAEYRFDLTLLLKPNT-E---WVDDGLRSLGSEE 314 (346)
T ss_pred CCEEEEEECCHH-HHHHHHHHCCCCCCHHHCCHHHHHH--------HHHCCCCEEEEECCCC-C---EECCCCCCCCCHH
T ss_conf 374789847767-8999998707865544506278877--------6327884799727998-7---3428852077432
Q ss_pred HHHHHHHHCCHHHH--HCCCEEEECC
Q ss_conf 99999851224321--0042599838
Q gi|254781026|r 152 CATEYQARISGPLM--DRIDIRIAVP 175 (186)
Q Consensus 152 ~~~~Y~~rls~pll--dR~Dl~v~~~ 175 (186)
T Consensus 315 ~R~~F~~~l~~~L~~~~~~f~~v~~~ 340 (346)
T TIGR01526 315 SRKEFQELLERALAEFGLSFVVVEED 340 (346)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 27899999999999709946998338