HHsearch alignment for GI: 254781026 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=93.80 E-value=0.024 Score=34.57 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 977786059999999887488989
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS 24 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~ 24 (186)
T Consensus 361 IIGPSgSGKStLaR~~vG~W~~~~ 384 (556)
T TIGR01842 361 IIGPSGSGKSTLARILVGIWPPAS 384 (556)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 874786525889878872101356