HHsearch alignment for GI: 254781026 and conserved domain: TIGR02329

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=98.84  E-value=1.9e-09  Score=76.24  Aligned_cols=110  Identities=27%  Similarity=0.364  Sum_probs=81.2

Q ss_pred             CCCCCCHHHHHHHHHHH-HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHH-------------HCCC
Q ss_conf             77786059999999887-488989788532300000027888756531112020377521001-------------1023
Q gi|254781026|r    2 IGPPGARKSMLASCLPS-ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIA-------------ALIG   67 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~-iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~-------------~l~g   67 (186)
T Consensus       348 ~GE~GTGKElvAq~~H~EY~-----------~R~~~~~~--------r~~~pFVAiNCGAi~EsLLEaELFGYeeGAFTG  408 (658)
T TIGR02329       348 EGESGTGKELVAQAIHREYA-----------LRYDQLSG--------RRDRPFVAINCGAIAESLLEAELFGYEEGAFTG  408 (658)
T ss_pred             ECCCCCCHHHHHHHHHHHHH-----------HHHHHHCC--------CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             14777228999999759998-----------74666501--------337884687474656888877642676665016


Q ss_pred             CCCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECC
Q ss_conf             43456827998279988998038785988999999999719523010030789847015675227
Q gi|254781026|r   68 GGLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMN  132 (186)
Q Consensus        68 g~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~N  132 (186)
T Consensus       409 aRrGG~~GL~E~Ah~GTLFLDEIGEmPLPLQtRLLRVLeEre--V~RvG~~~P~~VDvRvvaAth  471 (658)
T TIGR02329       409 ARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEERE--VVRVGGTEPVPVDVRVVAATH  471 (658)
T ss_pred             CCCCCCCCHHHHHCCCCEEEHHHCCCCCHHHHHHHHHHHCCC--EEECCCCCCCEEEEEEEECCC
T ss_conf             776776122220057951001003578614677777651221--476178754024443433122