HHsearch alignment for GI: 254781026 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=97.25  E-value=0.00089  Score=42.94  Aligned_cols=109  Identities=26%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCC-HHHCC-CCCCCCCH
Q ss_conf             97778605999999988748898----97885323000000278887565311120203775210-01102-34345682
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPL----SLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVT-IAALI-GGGLQVLP   74 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l----~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~-~~~l~-gg~~~~~p   74 (186)
T Consensus        41 F~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~-~i~~g~~~D-viEiD----AASN~gVD~IR~l~e~v~y~P~~  114 (363)
T TIGR02397        41 FSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCK-EINSGSSLD-VIEID----AASNNGVDDIRELRENVKYAPSK  114 (363)
T ss_pred             ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHCCCCCC-EEEEC----CCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             0285997635589999998658878778777750227-765289866-68864----86568788999998730368755


Q ss_pred             HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEE-EECCC
Q ss_conf             799827998899803878598899999999971952301003078984701567-52274
Q gi|254781026|r   75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLI-AAMNP  133 (186)
Q Consensus        75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lv-aa~NP  133 (186)
T Consensus       115 ~k-----YKvYIIDEVHMLS~~AFNALLKTLEEP-------------P~hV~FIlATTE~  156 (363)
T TIGR02397       115 GK-----YKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEP  156 (363)
T ss_pred             CC-----CCEEEEECCCCCCHHHHHHHHHHHCCC-------------CCCEEEEEECCCH
T ss_conf             44-----335887323028656899987652279-------------8762888734871