HHsearch alignment for GI: 254781026 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.67  E-value=1.8e-16  Score=117.38  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=114.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       532 F~GPTGVGKTElak~LA~~LG------------v~----l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~  595 (774)
T TIGR02639       532 FVGPTGVGKTELAKQLAEELG------------VH----LLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKH  595 (774)
T ss_pred             EECCCCCCHHHHHHHHHHHHC------------CH----HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             647989625788999999708------------20----01046504468999987416888851316777212233128


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC-------CCCCCCCCCCCCCCCCHHHH
Q ss_conf             99889980387859889999999997195230100307898470156752274-------65887889887643899999
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP-------CRCGMSNKDENVCIRGPRCA  153 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP-------cpcG~~~~~~~~c~c~~~~~  153 (186)
T Consensus       596 P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFR--NVILIMTSNaGa~E~~~~~iGF~~~~~~--~~~~~Ai  671 (774)
T TIGR02639       596 PHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFR--NVILIMTSNAGAREMSKNPIGFGGERVE--DKSEKAI  671 (774)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEC--CEEEEECCCCCCCCCCCCCCCCCCCCCH--HHHHHHH
T ss_conf             85354234666631336667876633543405888576311--3688840370010236776442555412--3348889


Q ss_pred             HHHHHHCCHH-HHHCCCEEEECCCCCHH
Q ss_conf             9998512243-21004259983885668
Q gi|254781026|r  154 TEYQARISGP-LMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       154 ~~Y~~rls~p-lldR~Dl~v~~~~~~~~  180 (186)
T Consensus       672 ----kk~F~PEFRNRLDaii~F~~L~~~  695 (774)
T TIGR02639       672 ----KKLFSPEFRNRLDAIIAFNDLSEE  695 (774)
T ss_pred             ----HHHCCCCCCCCCCCEEECCCCCHH
T ss_conf             ----731587420133464416998899