HHsearch alignment for GI: 254781026 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.95 E-value=1.7e-09 Score=76.50 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=104.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC----CHHHHHHHH-CEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHH
Q ss_conf 97778605999999988748898----978853230-0000027888756531112020377521001102343456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPL----SLEESLEVS-MIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l----~~~e~le~~-~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG 75 (186)
T Consensus 26 l~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~------kv~DqfihnV~K~~d~~~~~W~D~rL 99 (265)
T TIGR02640 26 LRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRK------KVVDQFIHNVVKLEDIVRQNWVDNRL 99 (265)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEE------EEEECCEEEEECCCCCCCCCCCCCHH
T ss_conf 447888556899999997368968998658232654423154675222------23201211134251220026678357
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEH----HCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99827998899803878598899999999971952301----00307898470156752274658878898876438999
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIA----RANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPR 151 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~----R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~ 151 (186)
T Consensus 100 t~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP-~FR~IfTSNp~E--YAGVh~-----~Q- 170 (265)
T TIGR02640 100 TLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHP-EFRVIFTSNPVE--YAGVHE-----TQ- 170 (265)
T ss_pred HHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC-CCCEEECCCCCC--CCCCCC-----HH-
T ss_conf 899756972766475788620456567555523215888787787225788-702463148701--057677-----16-
Q ss_pred HHHHHHHHCCHHHHHCC-CEEEECCCCCHHHH
Q ss_conf 99999851224321004-25998388566888
Q gi|254781026|r 152 CATEYQARISGPLMDRI-DIRIAVPSRTHIRS 182 (186)
Q Consensus 152 ~~~~Y~~rls~plldR~-Dl~v~~~~~~~~~~ 182 (186)
T Consensus 171 ----------DALlDRL~ti~~D~~D~~~e~a 192 (265)
T TIGR02640 171 ----------DALLDRLVTISMDYPDEDTETA 192 (265)
T ss_pred ----------HHHHHHHCCCCCCCCCHHHHHH
T ss_conf ----------6776644004578544478999