HHsearch alignment for GI: 254781026 and conserved domain: TIGR02688

>TIGR02688 TIGR02688 conserved hypothetical protein TIGR02688; InterPro: IPR014061 Members of this entry are uncharacterised proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families IPR004815 from INTERPRO (ATP-dependent protease La) or IPR003111 from INTERPRO (ATP-dependent protease La (LON) domain). The proteins in this entry are encoded by genes repeatedly found downstream of another gene that encodes an uncharacterised protein of about 880 amino acids in length (see IPR014060 from INTERPRO)..
Probab=97.55  E-value=0.00013  Score=47.90  Aligned_cols=128  Identities=21%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf             77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r    2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH   81 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh   81 (186)
T Consensus       223 LgPk~TGKSY~Y~n~------------------------Sp--------~~~liSGG~~T~A~LFyN~~t~~~Glv~~~D  270 (470)
T TIGR02688       223 LGPKGTGKSYIYENL------------------------SP--------YVILISGGEITVAKLFYNISTRKIGLVGLWD  270 (470)
T ss_pred             ECCCCCCCCHHEECC------------------------CC--------CEEEEECCCCCCCCCEEECCCCCCCEEEEEE
T ss_conf             578887730010067------------------------87--------7799838820533002475688643343133


Q ss_pred             CCEEEEECHHH----CCHHHHHHHHHHHHCCCEEEHHC-CEEEEECCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             98899803878----59889999999997195230100-30789847015675--2274658878898876438999999
Q gi|254781026|r   82 NGVLFLDEIPE----FSPQTLNALRQPLETGECIIARA-NRKISYPSRIQLIA--AMNPCRCGMSNKDENVCIRGPRCAT  154 (186)
Q Consensus        82 ~GVLflDE~~e----~~~~~l~~L~~~le~g~v~i~R~-g~~~~~Pa~f~Lva--a~NPcpcG~~~~~~~~c~c~~~~~~  154 (186)
T Consensus       271 --~VafDEv~~~~~~~~~e~~~~LK~Y~e~G--~f~RGG~~~~~s~AS~v~~GNVn~~~~~E~~~~~~~Lf~~-LPe~~r  345 (470)
T TIGR02688       271 --VVAFDEVATLKFEKPKELIGILKDYLESG--SFTRGGDETLSSDASFVFLGNVNVNLTSESMVKQSDLFSP-LPEFMR  345 (470)
T ss_pred             --EEEECCHHCCCCCCCHHHHHHHHHHHHCC--CCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf             --56550210100168067887755564257--6301563110113237766314688887874666664303-872200


Q ss_pred             HHHHHCCHHHHHCCCEE
Q ss_conf             99851224321004259
Q gi|254781026|r  155 EYQARISGPLMDRIDIR  171 (186)
Q Consensus       155 ~Y~~rls~plldR~Dl~  171 (186)
T Consensus       346 -----~DsAFLDRiHgy  357 (470)
T TIGR02688       346 -----EDSAFLDRIHGY  357 (470)
T ss_pred             -----CCHHHHHHHHHC
T ss_conf             -----001478677403