HHsearch alignment for GI: 254781026 and conserved domain: TIGR02688
>TIGR02688 TIGR02688 conserved hypothetical protein TIGR02688; InterPro: IPR014061 Members of this entry are uncharacterised proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families IPR004815 from INTERPRO (ATP-dependent protease La) or IPR003111 from INTERPRO (ATP-dependent protease La (LON) domain). The proteins in this entry are encoded by genes repeatedly found downstream of another gene that encodes an uncharacterised protein of about 880 amino acids in length (see IPR014060 from INTERPRO)..
Probab=97.55 E-value=0.00013 Score=47.90 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=87.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf 77786059999999887488989788532300000027888756531112020377521001102343456827998279
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLAH 81 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lAh 81 (186)
T Consensus 223 LgPk~TGKSY~Y~n~------------------------Sp--------~~~liSGG~~T~A~LFyN~~t~~~Glv~~~D 270 (470)
T TIGR02688 223 LGPKGTGKSYIYENL------------------------SP--------YVILISGGEITVAKLFYNISTRKIGLVGLWD 270 (470)
T ss_pred ECCCCCCCCHHEECC------------------------CC--------CEEEEECCCCCCCCCEEECCCCCCCEEEEEE
T ss_conf 578887730010067------------------------87--------7799838820533002475688643343133
Q ss_pred CCEEEEECHHH----CCHHHHHHHHHHHHCCCEEEHHC-CEEEEECCCEEEEE--ECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98899803878----59889999999997195230100-30789847015675--2274658878898876438999999
Q gi|254781026|r 82 NGVLFLDEIPE----FSPQTLNALRQPLETGECIIARA-NRKISYPSRIQLIA--AMNPCRCGMSNKDENVCIRGPRCAT 154 (186)
Q Consensus 82 ~GVLflDE~~e----~~~~~l~~L~~~le~g~v~i~R~-g~~~~~Pa~f~Lva--a~NPcpcG~~~~~~~~c~c~~~~~~ 154 (186)
T Consensus 271 --~VafDEv~~~~~~~~~e~~~~LK~Y~e~G--~f~RGG~~~~~s~AS~v~~GNVn~~~~~E~~~~~~~Lf~~-LPe~~r 345 (470)
T TIGR02688 271 --VVAFDEVATLKFEKPKELIGILKDYLESG--SFTRGGDETLSSDASFVFLGNVNVNLTSESMVKQSDLFSP-LPEFMR 345 (470)
T ss_pred --EEEECCHHCCCCCCCHHHHHHHHHHHHCC--CCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf --56550210100168067887755564257--6301563110113237766314688887874666664303-872200
Q ss_pred HHHHHCCHHHHHCCCEE
Q ss_conf 99851224321004259
Q gi|254781026|r 155 EYQARISGPLMDRIDIR 171 (186)
Q Consensus 155 ~Y~~rls~plldR~Dl~ 171 (186)
T Consensus 346 -----~DsAFLDRiHgy 357 (470)
T TIGR02688 346 -----EDSAFLDRIHGY 357 (470)
T ss_pred -----CCHHHHHHHHHC
T ss_conf -----001478677403