HHsearch alignment for GI: 254781026 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=96.84 E-value=0.0013 Score=41.94 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC------------HHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC
Q ss_conf 977786059999999887488989------------78853230000002788875653111202037752100110234
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLS------------LEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG 68 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~------------~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg 68 (186)
T Consensus 128 iIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC--~~GvPQ~~vG~RtDVLD~CPKAE----GmMM~ 201 (282)
T TIGR02858 128 IISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGC--VNGVPQLDVGIRTDVLDGCPKAE----GMMML 201 (282)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHH--CCCCCCCCCCCCEEECCCCCHHH----HHHHH
T ss_conf 8868898851048889888607854246899746998432465654--58824144676067517885378----99999
Q ss_pred CCCCCHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 34568279982799889980387859889999999997195230
Q gi|254781026|r 69 GLQVLPGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECII 112 (186)
Q Consensus 69 ~~~~~pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i 112 (186)
T Consensus 202 iRSMSP--------~Viv~DEIG--r~ED~~Al~eA~naGV~~I 235 (282)
T TIGR02858 202 IRSMSP--------DVIVVDEIG--REEDVEALLEALNAGVSVI 235 (282)
T ss_pred HHCCCC--------CEEEEECCC--CHHHHHHHHHHHCCCCEEE
T ss_conf 970698--------579981488--9533899999861675688