HHsearch alignment for GI: 254781026 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.71 E-value=2.4e-08 Score=69.76 Aligned_cols=125 Identities=26% Similarity=0.360 Sum_probs=78.9
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC---CCCCCC-HHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023---434568-279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG---GGLQVL-PGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g---g~~~~~-pG~ 76 (186)
T Consensus 63 ftG~PGtGkttva~~m~~~l~~l---------------Gy~r~G~~~-----------~~trddlvGqy~GhtaPktke~ 116 (284)
T TIGR02880 63 FTGNPGTGKTTVALRMAQILHRL---------------GYVRKGHLV-----------SVTRDDLVGQYIGHTAPKTKEV 116 (284)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHC---------------CCCCCCCEE-----------EEEHHHHHHHHHCCCCCHHHHH
T ss_conf 51689872489999999999871---------------540036267-----------8530013112212577226899
Q ss_pred HHHCCCCEEEEECHH---------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 982799889980387---------85988999999999719523010030789847015675227465887889887643
Q gi|254781026|r 77 DSLAHNGVLFLDEIP---------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI 147 (186)
Q Consensus 77 i~lAh~GVLflDE~~---------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~ 147 (186)
T Consensus 117 lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~r~~l-------------vvi~a------Gy~~rm----- 172 (284)
T TIGR02880 117 LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL-------------VVILA------GYKDRM----- 172 (284)
T ss_pred HHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE-------------EEEEE------CCHHHH-----
T ss_conf 987428736642203321776410223799999999872365537-------------88871------707888-----
Q ss_pred CCHHHHHHHHHHCCHH-HHHCCCEEEECCCCCHHHHH
Q ss_conf 8999999998512243-21004259983885668885
Q gi|254781026|r 148 RGPRCATEYQARISGP-LMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 148 c~~~~~~~Y~~rls~p-lldR~Dl~v~~~~~~~~~~~ 183 (186)
T Consensus 173 ------~~f~--~snPG~~sr~a~h~~fPdy~~~~l~ 201 (284)
T TIGR02880 173 ------DSFF--ESNPGLSSRVAHHVDFPDYSEEELL 201 (284)
T ss_pred ------HHHH--HCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf ------8875--1178624677643158887767899