HHsearch alignment for GI: 254781026 and conserved domain: TIGR02880

>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=98.71  E-value=2.4e-08  Score=69.76  Aligned_cols=125  Identities=26%  Similarity=0.360  Sum_probs=78.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC---CCCCCC-HHH
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023---434568-279
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG---GGLQVL-PGE   76 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g---g~~~~~-pG~   76 (186)
T Consensus        63 ftG~PGtGkttva~~m~~~l~~l---------------Gy~r~G~~~-----------~~trddlvGqy~GhtaPktke~  116 (284)
T TIGR02880        63 FTGNPGTGKTTVALRMAQILHRL---------------GYVRKGHLV-----------SVTRDDLVGQYIGHTAPKTKEV  116 (284)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHC---------------CCCCCCCEE-----------EEEHHHHHHHHHCCCCCHHHHH
T ss_conf             51689872489999999999871---------------540036267-----------8530013112212577226899


Q ss_pred             HHHCCCCEEEEECHH---------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             982799889980387---------85988999999999719523010030789847015675227465887889887643
Q gi|254781026|r   77 DSLAHNGVLFLDEIP---------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCI  147 (186)
Q Consensus        77 i~lAh~GVLflDE~~---------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~  147 (186)
T Consensus       117 lk~a~GGvlfideayyly~P~nerdyG~eaieillq~men~r~~l-------------vvi~a------Gy~~rm-----  172 (284)
T TIGR02880       117 LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL-------------VVILA------GYKDRM-----  172 (284)
T ss_pred             HHHHCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE-------------EEEEE------CCHHHH-----
T ss_conf             987428736642203321776410223799999999872365537-------------88871------707888-----


Q ss_pred             CCHHHHHHHHHHCCHH-HHHCCCEEEECCCCCHHHHH
Q ss_conf             8999999998512243-21004259983885668885
Q gi|254781026|r  148 RGPRCATEYQARISGP-LMDRIDIRIAVPSRTHIRSF  183 (186)
Q Consensus       148 c~~~~~~~Y~~rls~p-lldR~Dl~v~~~~~~~~~~~  183 (186)
T Consensus       173 ------~~f~--~snPG~~sr~a~h~~fPdy~~~~l~  201 (284)
T TIGR02880       173 ------DSFF--ESNPGLSSRVAHHVDFPDYSEEELL  201 (284)
T ss_pred             ------HHHH--HCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf             ------8875--1178624677643158887767899