HHsearch alignment for GI: 254781026 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.26 E-value=1e-11 Score=89.49 Aligned_cols=126 Identities=27% Similarity=0.361 Sum_probs=91.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCC---CCCCCC-HHH
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023---434568-279
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIG---GGLQVL-PGE 76 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~g---g~~~~~-pG~ 76 (186)
T Consensus 47 FKGNPGTGKTTVAR~~gklf~em---------------nvL~KGH~iE-----------~ERADLVGEYIGHTAqkTRe~ 100 (261)
T TIGR02881 47 FKGNPGTGKTTVARLLGKLFKEM---------------NVLSKGHLIE-----------VERADLVGEYIGHTAQKTREV 100 (261)
T ss_pred EECCCCCCHHHHHHHHHHHHHHC---------------CCCCCCCEEE-----------EEECCCCCCCCCCHHHHHHHH
T ss_conf 42786684389999999998533---------------7567886788-----------762221223203004899999
Q ss_pred HHHCCCCEEEEECHH--------HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 982799889980387--------859889999999997195230100307898470156752274658878898876438
Q gi|254781026|r 77 DSLAHNGVLFLDEIP--------EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIR 148 (186)
Q Consensus 77 i~lAh~GVLflDE~~--------e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c 148 (186)
T Consensus 101 ~kkA~GGvLFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~-------------~lvlILA------GY~~E------- 154 (261)
T TIGR02881 101 IKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRN-------------ELVLILA------GYSDE------- 154 (261)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC-------------CEEEEEE------CCHHH-------
T ss_conf 998638800557777761488887662088899998761569-------------8689970------87689-------
Q ss_pred CHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHH
Q ss_conf 99999999851224321004259983885668885
Q gi|254781026|r 149 GPRCATEYQARISGPLMDRIDIRIAVPSRTHIRSF 183 (186)
Q Consensus 149 ~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~~~~ 183 (186)
T Consensus 155 -----M~yFL~~NPGL~SRFPi~i~FPdY~~eeL~ 184 (261)
T TIGR02881 155 -----MDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred -----HHHHHHCCCCCCCCCCCEEECCCCCHHHHH
T ss_conf -----999862077977766505418899888999