HHsearch alignment for GI: 254781026 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.94 E-value=1.1e-27 Score=183.11 Aligned_cols=155 Identities=26% Similarity=0.316 Sum_probs=115.6
Q ss_pred CCCCCCCHHHHHHHHHHH---HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHC---CCCCCCCCH
Q ss_conf 977786059999999887---48898978853230000002788875653111202037752100110---234345682
Q gi|254781026|r 1 MIGPPGARKSMLASCLPS---ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAAL---IGGGLQVLP 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~---iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l---~gg~~~~~p 74 (186)
T Consensus 91 iYGPPGVGKTAAARLVLeeAKk~~~SPFke--~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~ 168 (532)
T TIGR02902 91 IYGPPGVGKTAAARLVLEEAKKNPASPFKE--EAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKP 168 (532)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 878869617899999999865087537898--866898505103602146666567761585333765457885575877
Q ss_pred HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEE---------------ECCCEEEEEECCCCCCCCC
Q ss_conf 7998279988998038785988999999999719523010030789---------------8470156752274658878
Q gi|254781026|r 75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS---------------YPSRIQLIAAMNPCRCGMS 139 (186)
Q Consensus 75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~---------------~Pa~f~Lvaa~NPcpcG~~ 139 (186)
T Consensus 169 GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~Pe--- 245 (532)
T TIGR02902 169 GAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPE--- 245 (532)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC---
T ss_conf 76320258655121246658243531411330222000012358777865427899720678734012133369877---
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf 89887643899999999851224321004259983885668
Q gi|254781026|r 140 NKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI 180 (186)
Q Consensus 140 ~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~ 180 (186)
T Consensus 246 ---E----------------IpPAlRSRC-~EIFFR~L~~E 266 (532)
T TIGR02902 246 ---E----------------IPPALRSRC-VEIFFRPLLKE 266 (532)
T ss_pred ---C----------------CCHHHHCCC-EEEEECCCCHH
T ss_conf ---6----------------783465052-26771688878