HHsearch alignment for GI: 254781026 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.94  E-value=1.1e-27  Score=183.11  Aligned_cols=155  Identities=26%  Similarity=0.316  Sum_probs=115.6

Q ss_pred             CCCCCCCHHHHHHHHHHH---HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHC---CCCCCCCCH
Q ss_conf             977786059999999887---48898978853230000002788875653111202037752100110---234345682
Q gi|254781026|r    1 MIGPPGARKSMLASCLPS---ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAAL---IGGGLQVLP   74 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~---iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l---~gg~~~~~p   74 (186)
T Consensus        91 iYGPPGVGKTAAARLVLeeAKk~~~SPFke--~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~  168 (532)
T TIGR02902        91 IYGPPGVGKTAAARLVLEEAKKNPASPFKE--EAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKP  168 (532)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             878869617899999999865087537898--866898505103602146666567761585333765457885575877


Q ss_pred             HHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEE---------------ECCCEEEEEECCCCCCCCC
Q ss_conf             7998279988998038785988999999999719523010030789---------------8470156752274658878
Q gi|254781026|r   75 GEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS---------------YPSRIQLIAAMNPCRCGMS  139 (186)
Q Consensus        75 G~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~---------------~Pa~f~Lvaa~NPcpcG~~  139 (186)
T Consensus       169 GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~Pe---  245 (532)
T TIGR02902       169 GAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPE---  245 (532)
T ss_pred             CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC---
T ss_conf             76320258655121246658243531411330222000012358777865427899720678734012133369877---


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf             89887643899999999851224321004259983885668
Q gi|254781026|r  140 NKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       140 ~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~~~  180 (186)
T Consensus       246 ---E----------------IpPAlRSRC-~EIFFR~L~~E  266 (532)
T TIGR02902       246 ---E----------------IPPALRSRC-VEIFFRPLLKE  266 (532)
T ss_pred             ---C----------------CCHHHHCCC-EEEEECCCCHH
T ss_conf             ---6----------------783465052-26771688878