HHsearch alignment for GI: 254781026 and conserved domain: TIGR02903

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.91  E-value=1.1e-24  Score=165.59  Aligned_cols=159  Identities=25%  Similarity=0.252  Sum_probs=111.4

Q ss_pred             CCCCCCCHHHHHHHHHHH---HCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHH---C-CCCCCCCC
Q ss_conf             977786059999999887---4889897885323000000278887565311120203775210011---0-23434568
Q gi|254781026|r    1 MIGPPGARKSMLASCLPS---ILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAA---L-IGGGLQVL   73 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~---iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~---l-~gg~~~~~   73 (186)
T Consensus       181 LYGPPGVGKTTaARl~LEe~K~~~~tPF~~--DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk  258 (616)
T TIGR02903       181 LYGPPGVGKTTAARLALEEAKKLKNTPFAE--DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPK  258 (616)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf             557338847899999876213687447611--378575157626677410147767762576556764011047879898


Q ss_pred             HHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEE---------------ECCCEEEEEECCCCCCCC
Q ss_conf             27998279988998038785988999999999719523010030789---------------847015675227465887
Q gi|254781026|r   74 PGEDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKIS---------------YPSRIQLIAAMNPCRCGM  138 (186)
Q Consensus        74 pG~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~---------------~Pa~f~Lvaa~NPcpcG~  138 (186)
T Consensus       259 ~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~--  336 (616)
T TIGR02903       259 LGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPE--  336 (616)
T ss_pred             CCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHH--
T ss_conf             987100477567650211222787632444322643665321248753786558888522688825687266158824--


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCC--HHHHHH
Q ss_conf             8898876438999999998512243210042599838856--688852
Q gi|254781026|r  139 SNKDENVCIRGPRCATEYQARISGPLMDRIDIRIAVPSRT--HIRSFC  184 (186)
Q Consensus       139 ~~~~~~~c~c~~~~~~~Y~~rls~plldR~Dl~v~~~~~~--~~~~~~  184 (186)
T Consensus       337 --------------------eINpALRSRCaE-vfFePL~p~dI~~Iv  363 (616)
T TIGR02903       337 --------------------EINPALRSRCAE-VFFEPLTPEDIKEIV  363 (616)
T ss_pred             --------------------HCCHHHHCCCCE-EECCCCCHHHHHHHH
T ss_conf             --------------------405123301431-321798878999999