HHsearch alignment for GI: 254781026 and conserved domain: TIGR02915

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.15  E-value=4.2e-11  Score=85.89  Aligned_cols=117  Identities=21%  Similarity=0.334  Sum_probs=85.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       170 lLGESGTGKEV~ArA~H~~S~R~~~-~FVAIN-----CAAIP--EnLLEsELFG------yEKGAFTGA~k~T~GKIE~A  235 (451)
T TIGR02915       170 LLGESGTGKEVLARALHELSDRKDK-RFVAIN-----CAAIP--ENLLESELFG------YEKGAFTGAVKQTLGKIEYA  235 (451)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCC-CEEEEE-----CCCCC--CHHHHHHHHC------CCCHHHHHHHCCCCCCEEEE
T ss_conf             1046671178999898420578977-734441-----67457--5246677603------41012422003477616750


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf             99889980387859889999999997195230100307898470156752274
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP  133 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP  133 (186)
T Consensus       236 ~~GTLFLDEIGDLP~~LQAKLLRFLQEr--VIER~GGR~eIPVDVRvvCATnq  286 (451)
T TIGR02915       236 HGGTLFLDEIGDLPLNLQAKLLRFLQER--VIERLGGREEIPVDVRVVCATNQ  286 (451)
T ss_pred             CCCCCCCCCHHCCCHHHHHHHHHHHHHH--HHHCCCCCCCCCCCEEEEECCCH
T ss_conf             6883011112206766899999875466--63105887245614267503224