HHsearch alignment for GI: 254781026 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.15 E-value=4.2e-11 Score=85.89 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=85.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 170 lLGESGTGKEV~ArA~H~~S~R~~~-~FVAIN-----CAAIP--EnLLEsELFG------yEKGAFTGA~k~T~GKIE~A 235 (451)
T TIGR02915 170 LLGESGTGKEVLARALHELSDRKDK-RFVAIN-----CAAIP--ENLLESELFG------YEKGAFTGAVKQTLGKIEYA 235 (451)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCC-CEEEEE-----CCCCC--CHHHHHHHHC------CCCHHHHHHHCCCCCCEEEE
T ss_conf 1046671178999898420578977-734441-----67457--5246677603------41012422003477616750
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCC
Q ss_conf 99889980387859889999999997195230100307898470156752274
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNP 133 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NP 133 (186)
T Consensus 236 ~~GTLFLDEIGDLP~~LQAKLLRFLQEr--VIER~GGR~eIPVDVRvvCATnq 286 (451)
T TIGR02915 236 HGGTLFLDEIGDLPLNLQAKLLRFLQER--VIERLGGREEIPVDVRVVCATNQ 286 (451)
T ss_pred CCCCCCCCCHHCCCHHHHHHHHHHHHHH--HHHCCCCCCCCCCCEEEEECCCH
T ss_conf 6883011112206766899999875466--63105887245614267503224