HHsearch alignment for GI: 254781026 and conserved domain: TIGR02974

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=99.20  E-value=4.9e-12  Score=91.38  Aligned_cols=144  Identities=24%  Similarity=0.337  Sum_probs=96.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus        27 iiGERGTGKELiA~RLHyLS~R------W~~P-lv~LNCAA-Lse~LldSELFG---H---EaGAFTGA~~rh~GRFERA   92 (349)
T TIGR02974        27 IIGERGTGKELIAARLHYLSKR------WQQP-LVKLNCAA-LSENLLDSELFG---H---EAGAFTGAKKRHEGRFERA   92 (349)
T ss_pred             EEECCCCCHHHHHHHHHHHHHH------HCCC-CEEEECCC-CCCHHHHHHHHH---H---CCCCHHHHCCCCCCCCEEC
T ss_conf             8614674689999885332465------5488-62661012-782555566531---0---0100130304688985443


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI  160 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl  160 (186)
T Consensus        93 dGGTLFLDElAtas~~VQEKLLRViEYG--~fERVGG~~~l~vDVRlvaATN~D----LP----------~l--A~~G~F  154 (349)
T TIGR02974        93 DGGTLFLDELATASLAVQEKLLRVIEYG--EFERVGGSQTLKVDVRLVAATNAD----LP----------AL--AAEGRF  154 (349)
T ss_pred             CCCCCHHHHHHCCCHHHHHHHHHHHCCC--CEEECCCCCEEEECCEEEECCCCC----HH----------HH--HHCCCC
T ss_conf             6887388887142167678661201013--033017860477351367621413----69----------89--865898


Q ss_pred             CHHHHHC--CCEEEECCCC
Q ss_conf             2432100--4259983885
Q gi|254781026|r  161 SGPLMDR--IDIRIAVPSR  177 (186)
Q Consensus       161 s~plldR--~Dl~v~~~~~  177 (186)
T Consensus       155 RaDLLDRLAFDV-i~LPPL  172 (349)
T TIGR02974       155 RADLLDRLAFDV-ITLPPL  172 (349)
T ss_pred             CCHHHHHHHHHH-CCCCCC
T ss_conf             401455445655-079788