HHsearch alignment for GI: 254781026 and conserved domain: TIGR02974
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=99.20 E-value=4.9e-12 Score=91.38 Aligned_cols=144 Identities=24% Similarity=0.337 Sum_probs=96.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA 80 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA 80 (186)
T Consensus 27 iiGERGTGKELiA~RLHyLS~R------W~~P-lv~LNCAA-Lse~LldSELFG---H---EaGAFTGA~~rh~GRFERA 92 (349)
T TIGR02974 27 IIGERGTGKELIAARLHYLSKR------WQQP-LVKLNCAA-LSENLLDSELFG---H---EAGAFTGAKKRHEGRFERA 92 (349)
T ss_pred EEECCCCCHHHHHHHHHHHHHH------HCCC-CEEEECCC-CCCHHHHHHHHH---H---CCCCHHHHCCCCCCCCEEC
T ss_conf 8614674689999885332465------5488-62661012-782555566531---0---0100130304688985443
Q ss_pred CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99889980387859889999999997195230100307898470156752274658878898876438999999998512
Q gi|254781026|r 81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEYQARI 160 (186)
Q Consensus 81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y~~rl 160 (186)
T Consensus 93 dGGTLFLDElAtas~~VQEKLLRViEYG--~fERVGG~~~l~vDVRlvaATN~D----LP----------~l--A~~G~F 154 (349)
T TIGR02974 93 DGGTLFLDELATASLAVQEKLLRVIEYG--EFERVGGSQTLKVDVRLVAATNAD----LP----------AL--AAEGRF 154 (349)
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHCCC--CEEECCCCCEEEECCEEEECCCCC----HH----------HH--HHCCCC
T ss_conf 6887388887142167678661201013--033017860477351367621413----69----------89--865898
Q ss_pred CHHHHHC--CCEEEECCCC
Q ss_conf 2432100--4259983885
Q gi|254781026|r 161 SGPLMDR--IDIRIAVPSR 177 (186)
Q Consensus 161 s~plldR--~Dl~v~~~~~ 177 (186)
T Consensus 155 RaDLLDRLAFDV-i~LPPL 172 (349)
T TIGR02974 155 RADLLDRLAFDV-ITLPPL 172 (349)
T ss_pred CCHHHHHHHHHH-CCCCCC
T ss_conf 401455445655-079788