HHsearch alignment for GI: 254781026 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59  E-value=4.8e-15  Score=109.05  Aligned_cols=161  Identities=16%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       601 FlGPTGVGKTElAK~LA~~LFg-------------~e~~liR~DMSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~  667 (852)
T TIGR03345       601 LVGPSGVGKTETALALAELLYG-------------GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK  667 (852)
T ss_pred             EECCCCCCHHHHHHHHHHHHCC-------------CCCCEEEECCHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             8789987789999999999719-------------861147842243210436878638999766748777210988809


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCC--C--CCCCCCCCCHHHH---
Q ss_conf             99889980387859889999999997195230100307898470156752274658878--8--9887643899999---
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMS--N--KDENVCIRGPRCA---  153 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~--~--~~~~~c~c~~~~~---  153 (186)
T Consensus       668 PysVvLfDEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~--NtIIImTSN~---Gs~~i~~~~~~~~~~~~~~~~~~~  742 (852)
T TIGR03345       668 PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFK--NTVILLTSNA---GSDLIMALCADPETAPDPEALLEA  742 (852)
T ss_pred             CCEEEEECHHHHCCHHHHHHHHHHHCCCEEECCCCCEEECE--EEEEEECCCH---HHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             98688861130028899999998724677757999988452--1299975724---479998640376555668999999


Q ss_pred             --HHHHHHCCHHHHHCCCEEEECCCCCHH
Q ss_conf             --999851224321004259983885668
Q gi|254781026|r  154 --TEYQARISGPLMDRIDIRIAVPSRTHI  180 (186)
Q Consensus       154 --~~Y~~rls~plldR~Dl~v~~~~~~~~  180 (186)
T Consensus       743 v~~~l~~~F~PEFlnRi~ii~F~-~L~~~  770 (852)
T TIGR03345       743 LRPELLKVFKPAFLGRMTVIPYL-PLDDD  770 (852)
T ss_pred             HHHHHHHHCCHHHHCCEEEEEEC-CCCHH
T ss_conf             99999834798886456689736-89999