HHsearch alignment for GI: 254781026 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.10 E-value=1.6e-06 Score=59.03 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC-----CCCCC-H
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234-----34568-2
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG-----GLQVL-P 74 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg-----~~~~~-p 74 (186)
T Consensus 213 LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLD-----------------------lg~LvAGtkyRGeFEeRlk 269 (852)
T TIGR03345 213 LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD-----------------------LGLLQAGASVKGEFENRLK 269 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEE-----------------------HHHHHHCCCCCCHHHHHHH
T ss_conf 65799987999999999999769998677438567867-----------------------8888640357635999999
Q ss_pred ---HHHHHCCC-CEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf ---79982799-88998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r 75 ---GEDSLAHN-GVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 75 ---G~i~lAh~-GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
T Consensus 270 ~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGel---------------r~IGATT~~E------- 327 (852)
T TIGR03345 270 SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL---------------RTIAATTWAE------- 327 (852)
T ss_pred HHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf 999999848997699963487752899888862278875178737873---------------4998357899-------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf 876438999999998512243210042-599838856
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRID-IRIAVPSRT 178 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~D-l~v~~~~~~ 178 (186)
T Consensus 328 ----------Yrk~iEk-D~AL~RRFq~V~V~EPs~e 353 (852)
T TIGR03345 328 ----------YKKYFEK-DPALTRRFQVVKVEEPDEE 353 (852)
T ss_pred ----------HHHHHHC-CHHHHHHCCCCCCCCCCHH
T ss_conf ----------9888642-6889962475527999879