HHsearch alignment for GI: 254781026 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.10  E-value=1.6e-06  Score=59.03  Aligned_cols=122  Identities=20%  Similarity=0.311  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC-----CCCCC-H
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234-----34568-2
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG-----GLQVL-P   74 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg-----~~~~~-p   74 (186)
T Consensus       213 LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLD-----------------------lg~LvAGtkyRGeFEeRlk  269 (852)
T TIGR03345       213 LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD-----------------------LGLLQAGASVKGEFENRLK  269 (852)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEE-----------------------HHHHHHCCCCCCHHHHHHH
T ss_conf             65799987999999999999769998677438567867-----------------------8888640357635999999


Q ss_pred             ---HHHHHCCC-CEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             ---79982799-88998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r   75 ---GEDSLAHN-GVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD  142 (186)
Q Consensus        75 ---G~i~lAh~-GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~  142 (186)
T Consensus       270 ~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGel---------------r~IGATT~~E-------  327 (852)
T TIGR03345       270 SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL---------------RTIAATTWAE-------  327 (852)
T ss_pred             HHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf             999999848997699963487752899888862278875178737873---------------4998357899-------


Q ss_pred             CCCCCCCHHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf             876438999999998512243210042-599838856
Q gi|254781026|r  143 ENVCIRGPRCATEYQARISGPLMDRID-IRIAVPSRT  178 (186)
Q Consensus       143 ~~~c~c~~~~~~~Y~~rls~plldR~D-l~v~~~~~~  178 (186)
T Consensus       328 ----------Yrk~iEk-D~AL~RRFq~V~V~EPs~e  353 (852)
T TIGR03345       328 ----------YKKYFEK-DPALTRRFQVVKVEEPDEE  353 (852)
T ss_pred             ----------HHHHHHC-CHHHHHHCCCCCCCCCCHH
T ss_conf             ----------9888642-6889962475527999879