HHsearch alignment for GI: 254781026 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63  E-value=1.3e-15  Score=112.46  Aligned_cols=166  Identities=15%  Similarity=0.089  Sum_probs=102.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHC
Q ss_conf             97778605999999988748898978853230000002788875653111202037752100110234345682799827
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGEDSLA   80 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i~lA   80 (186)
T Consensus       600 f~GptGvGKTELAKaLAe~Lfg-------------~~~~LIriDMSEy~E~hsvsrLiGaPPGYVGy~egG~Lte~vr~~  666 (852)
T TIGR03346       600 FLGPTGVGKTELAKALAEFLFD-------------DEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRK  666 (852)
T ss_pred             EECCCCCCHHHHHHHHHHHHHC-------------CCCCEEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCEECHHHHHC
T ss_conf             8678877689999999999855-------------852069843044301224778558999767768787423989819


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCC--CCCCCCCCCCCCHHHHHHHHH
Q ss_conf             998899803878598899999999971952301003078984701567522746588--788988764389999999985
Q gi|254781026|r   81 HNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCG--MSNKDENVCIRGPRCATEYQA  158 (186)
Q Consensus        81 h~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG--~~~~~~~~c~c~~~~~~~Y~~  158 (186)
T Consensus       667 PysVvL~DEIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~--NtiiimTSN~Ga~~i~~~~~~~~~~~~~~~~~~~~~~  744 (852)
T TIGR03346       667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR--NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRA  744 (852)
T ss_pred             CCEEEEECCHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEE--EEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             88799853054307689999998823674307999888535--5689861540659997411455579999999999996


Q ss_pred             HCCHHHHHCCCEEEECCCCCHHH
Q ss_conf             12243210042599838856688
Q gi|254781026|r  159 RISGPLMDRIDIRIAVPSRTHIR  181 (186)
Q Consensus       159 rls~plldR~Dl~v~~~~~~~~~  181 (186)
T Consensus       745 ~F~PEflnRid~ii~F~~L~~~~  767 (852)
T TIGR03346       745 HFRPEFLNRIDEIVVFHPLGREQ  767 (852)
T ss_pred             HCCHHHHHHCCEEEEECCCCHHH
T ss_conf             58998996378689837899999