HHsearch alignment for GI: 254781026 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.17  E-value=1.6e-06  Score=59.09  Aligned_cols=122  Identities=24%  Similarity=0.380  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-----CC---
Q ss_conf             9777860599999998874889897885323000000278887565311120203775210011023434-----56---
Q gi|254781026|r    1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-----QV---   72 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-----~~---   72 (186)
T Consensus       199 LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LD-----------------------lg~LvAGtkyRGeFEeRlk  255 (852)
T TIGR03346       199 LIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD-----------------------MGALIAGAKYRGEFEERLK  255 (852)
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEE-----------------------HHHHHCCCCCCHHHHHHHH
T ss_conf             12799987999999999998669999788518512752-----------------------8877521530078999999


Q ss_pred             -CHHHHHHCC-CCEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             -827998279-988998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r   73 -LPGEDSLAH-NGVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD  142 (186)
Q Consensus        73 -~pG~i~lAh-~GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~  142 (186)
T Consensus       256 ~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGel---------------r~IgATT~~E-------  313 (852)
T TIGR03346       256 AVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL---------------HCIGATTLDE-------  313 (852)
T ss_pred             HHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf             999999858998799961255532688766641067774378747985---------------5998278999-------


Q ss_pred             CCCCCCCHHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf             876438999999998512243210042-599838856
Q gi|254781026|r  143 ENVCIRGPRCATEYQARISGPLMDRID-IRIAVPSRT  178 (186)
Q Consensus       143 ~~~c~c~~~~~~~Y~~rls~plldR~D-l~v~~~~~~  178 (186)
T Consensus       314 ----------Yrk~iEk-D~AL~RRFq~I~V~EPs~e  339 (852)
T TIGR03346       314 ----------YRKYIEK-DAALERRFQPVFVDEPTVE  339 (852)
T ss_pred             ----------HHHHHHC-CHHHHHHCCCCCCCCCCHH
T ss_conf             ----------9988322-6889973771204799868