HHsearch alignment for GI: 254781026 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.17 E-value=1.6e-06 Score=59.09 Aligned_cols=122 Identities=24% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCC-----CC---
Q ss_conf 9777860599999998874889897885323000000278887565311120203775210011023434-----56---
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGL-----QV--- 72 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~-----~~--- 72 (186)
T Consensus 199 LVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LD-----------------------lg~LvAGtkyRGeFEeRlk 255 (852)
T TIGR03346 199 LIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD-----------------------MGALIAGAKYRGEFEERLK 255 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEE-----------------------HHHHHCCCCCCHHHHHHHH
T ss_conf 12799987999999999998669999788518512752-----------------------8877521530078999999
Q ss_pred -CHHHHHHCC-CCEEEEECHHHC--------CHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf -827998279-988998038785--------9889999999997195230100307898470156752274658878898
Q gi|254781026|r 73 -LPGEDSLAH-NGVLFLDEIPEF--------SPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKD 142 (186)
Q Consensus 73 -~pG~i~lAh-~GVLflDE~~e~--------~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~ 142 (186)
T Consensus 256 ~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGel---------------r~IgATT~~E------- 313 (852)
T TIGR03346 256 AVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL---------------HCIGATTLDE------- 313 (852)
T ss_pred HHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC---------------EEEEECCHHH-------
T ss_conf 999999858998799961255532688766641067774378747985---------------5998278999-------
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHCCC-EEEECCCCC
Q ss_conf 876438999999998512243210042-599838856
Q gi|254781026|r 143 ENVCIRGPRCATEYQARISGPLMDRID-IRIAVPSRT 178 (186)
Q Consensus 143 ~~~c~c~~~~~~~Y~~rls~plldR~D-l~v~~~~~~ 178 (186)
T Consensus 314 ----------Yrk~iEk-D~AL~RRFq~I~V~EPs~e 339 (852)
T TIGR03346 314 ----------YRKYIEK-DAALERRFQPVFVDEPTVE 339 (852)
T ss_pred ----------HHHHHHC-CHHHHHHCCCCCCCCCCHH
T ss_conf ----------9988322-6889973771204799868