HHsearch alignment for GI: 254781026 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=7e-12 Score=90.48 Aligned_cols=122 Identities=30% Similarity=0.417 Sum_probs=78.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC-----CCCCCHH
Q ss_conf 97778605999999988748898978853230000002788875653111202037752100110234-----3456827
Q gi|254781026|r 1 MIGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGG-----GLQVLPG 75 (186)
Q Consensus 1 l~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg-----~~~~~pG 75 (186)
T Consensus 24 l~GppGtGKT~la~~ia~~~~~~--------------------~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 24 LYGPPGTGKTTLARAIANELFRP--------------------GAPFLY---LNA--SDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred EECCCCCCHHHHHHHHHHHHCCC--------------------CCCEEE---EEH--HHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98999988659999999971213--------------------798278---547--77046777757605778898999
Q ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99827998899803878598899999999971952301003078984701567522746588788988764389999999
Q gi|254781026|r 76 EDSLAHNGVLFLDEIPEFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATE 155 (186)
Q Consensus 76 ~i~lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~ 155 (186)
T Consensus 79 ~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~vI~~tn~~~~------------------- 132 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL------------------- 132 (151)
T ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCC-------CCCCCEEEEEEECCCCC-------------------
T ss_conf 9997699869820166559999999999998715754-------06788899995289988-------------------
Q ss_pred HHHHCCHHHHHCCCEEEECC
Q ss_conf 98512243210042599838
Q gi|254781026|r 156 YQARISGPLMDRIDIRIAVP 175 (186)
Q Consensus 156 Y~~rls~plldR~Dl~v~~~ 175 (186)
T Consensus 133 --~~~~~~~~~R~~~~i~~~ 150 (151)
T cd00009 133 --GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --CCHHHHHHCCCCEEEECC
T ss_conf --683776425598698638