HHsearch alignment for GI: 254781026 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.14  E-value=0.04  Score=33.22  Aligned_cols=17  Identities=29%  Similarity=0.462  Sum_probs=13.9

Q ss_pred             CCCCCCCHHHHHHHHHH
Q ss_conf             97778605999999988
Q gi|254781026|r    1 MIGPPGARKSMLASCLP   17 (186)
Q Consensus         1 l~GpPG~GKS~lar~l~   17 (186)
T Consensus         4 i~G~pGsGKT~~a~qfl   20 (187)
T cd01124           4 LSGGPGTGKTTFALQFL   20 (187)
T ss_pred             EEECCCCCHHHHHHHHH
T ss_conf             87689999999999999