HHsearch alignment for GI: 254781026 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.10 E-value=0.057 Score=32.35 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=64.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-H--
Q ss_conf 7778605999999988748898978853230000002788875653111202037752100110234345682799-8--
Q gi|254781026|r 2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-S-- 78 (186)
Q Consensus 2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~-- 78 (186)
T Consensus 31 sG~tGSGKTTll~al~~~i~~~~r--------ivti---Ed~~El~l~~~~~v---~l~~~~~~~~~~~~~~~~~li~~a 96 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFIPPDER--------IITI---EDTAELQLPHPNWV---RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCC--------EEEE---CCCHHHCCCCCCEE---EEEEECCCCCCCCEECHHHHHHHH
T ss_conf 899999899999999961334564--------5984---15354047777568---888604645786503499998873
Q ss_pred -HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE-EE--HHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -27998899803878598899999999971952-30--100307898470156752274658878898876438999999
Q gi|254781026|r 79 -LAHNGVLFLDEIPEFSPQTLNALRQPLETGEC-II--ARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCAT 154 (186)
Q Consensus 79 -lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v-~i--~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~ 154 (186)
T Consensus 97 LR~~pd~iivGEiR--~~Ea~~-~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~~--------------~~~~~~ 159 (186)
T cd01130 97 LRMRPDRIIVGEVR--GGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPL--------------GRPLLR 159 (186)
T ss_pred CCCCCCEEECCCCC--CHHHHH-HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------------CHHHHH
T ss_conf 66899737317568--399999-9999974898603031589999999999988754799--------------999999
Q ss_pred HHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf 998512243210042599838856
Q gi|254781026|r 155 EYQARISGPLMDRIDIRIAVPSRT 178 (186)
Q Consensus 155 ~Y~~rls~plldR~Dl~v~~~~~~ 178 (186)
T Consensus 160 -------~~ia~~id~vV~~~~~~ 176 (186)
T cd01130 160 -------EQIKEAIDVIVHIARLK 176 (186)
T ss_pred -------HHHHHHCCEEEEEEEEC
T ss_conf -------99997577999998876