HHsearch alignment for GI: 254781026 and conserved domain: cd01130

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.10  E-value=0.057  Score=32.35  Aligned_cols=139  Identities=19%  Similarity=0.236  Sum_probs=64.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCCHHHH-H--
Q ss_conf             7778605999999988748898978853230000002788875653111202037752100110234345682799-8--
Q gi|254781026|r    2 IGPPGARKSMLASCLPSILLPLSLEESLEVSMIYSISGHSSHEYSFIQNRPFRSPHHSVTIAALIGGGLQVLPGED-S--   78 (186)
Q Consensus         2 ~GpPG~GKS~lar~l~~iLP~l~~~e~le~~~i~s~~g~~~~~~~~~~~~p~~~~~~~~~~~~l~gg~~~~~pG~i-~--   78 (186)
T Consensus        31 sG~tGSGKTTll~al~~~i~~~~r--------ivti---Ed~~El~l~~~~~v---~l~~~~~~~~~~~~~~~~~li~~a   96 (186)
T cd01130          31 SGGTGSGKTTLLNALLAFIPPDER--------IITI---EDTAELQLPHPNWV---RLVTRPGNVEGSGEVTMADLLRSA   96 (186)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCCCC--------EEEE---CCCHHHCCCCCCEE---EEEEECCCCCCCCEECHHHHHHHH
T ss_conf             899999899999999961334564--------5984---15354047777568---888604645786503499998873


Q ss_pred             -HCCCCEEEEECHHHCCHHHHHHHHHHHHCCCE-EE--HHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             -27998899803878598899999999971952-30--100307898470156752274658878898876438999999
Q gi|254781026|r   79 -LAHNGVLFLDEIPEFSPQTLNALRQPLETGEC-II--ARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCAT  154 (186)
Q Consensus        79 -lAh~GVLflDE~~e~~~~~l~~L~~~le~g~v-~i--~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~  154 (186)
T Consensus        97 LR~~pd~iivGEiR--~~Ea~~-~l~a~~tGh~g~ltTiHa~s~~~ai~Rl~~l~~~~~~--------------~~~~~~  159 (186)
T cd01130          97 LRMRPDRIIVGEVR--GGEALD-LLQAMNTGHPGGMTTIHANSAEEALTRLELLPSNVPL--------------GRPLLR  159 (186)
T ss_pred             CCCCCCEEECCCCC--CHHHHH-HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--------------CHHHHH
T ss_conf             66899737317568--399999-9999974898603031589999999999988754799--------------999999


Q ss_pred             HHHHHCCHHHHHCCCEEEECCCCC
Q ss_conf             998512243210042599838856
Q gi|254781026|r  155 EYQARISGPLMDRIDIRIAVPSRT  178 (186)
Q Consensus       155 ~Y~~rls~plldR~Dl~v~~~~~~  178 (186)
T Consensus       160 -------~~ia~~id~vV~~~~~~  176 (186)
T cd01130         160 -------EQIKEAIDVIVHIARLK  176 (186)
T ss_pred             -------HHHHHHCCEEEEEEEEC
T ss_conf             -------99997577999998876