HHsearch alignment for GI: 254781026 and conserved domain: cd03115

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.59  E-value=0.059  Score=32.25  Aligned_cols=69  Identities=14%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             HCCCCEEEEECHH--HCCHHHHHHHHHHHHCCCEEEHHCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             2799889980387--85988999999999719523010030789847015675227465887889887643899999999
Q gi|254781026|r   79 LAHNGVLFLDEIP--EFSPQTLNALRQPLETGECIIARANRKISYPSRIQLIAAMNPCRCGMSNKDENVCIRGPRCATEY  156 (186)
Q Consensus        79 lAh~GVLflDE~~--e~~~~~l~~L~~~le~g~v~i~R~g~~~~~Pa~f~Lvaa~NPcpcG~~~~~~~~c~c~~~~~~~Y  156 (186)
T Consensus        80 ~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~------------p~~~~LVl~a~~---~~----~-----~~~~~~~f  135 (173)
T cd03115          80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVK------------PDEVLLVVDAMT---GQ----D-----AVNQAKAF  135 (173)
T ss_pred             HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC------------CCCCEEECCCCC---HH----H-----HHHHHHHH
T ss_conf             568998999788878799999999999986448------------972157424655---06----5-----89999998


Q ss_pred             HH--HCCHHHHHCCCEE
Q ss_conf             85--1224321004259
Q gi|254781026|r  157 QA--RISGPLMDRIDIR  171 (186)
Q Consensus       157 ~~--rls~plldR~Dl~  171 (186)
T Consensus       136 ~~~~~~~~~I~TKlDet  152 (173)
T cd03115         136 NEALGITGVILTKLDGD  152 (173)
T ss_pred             HHCCCCCEEEEEEECCC
T ss_conf             74279978999714389